BAC Information

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BAC

Clone NameMSMg01-106E08
Chromosome6 (Build37)
Map Location 27,893,326 - 27,894,005
singlet/doubletsinglet
Overlap geneGrm8
Upstream geneLOC100041247
Downstream gene6530409C15Rik, AA407452, LOC100041304, LOC384360, Gcc1, Arf5, Fscn3, Pax4, LOC100041350, Snd1, Lrrc4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-106E08.T7 (MSMg01no106_e08.b1)MSMg01-106E08.TJ (MSMg01no106_e08.g1)
ACCAG320404AG320405
length1,3261,715
length of high quality
(start - end)		731 (35 - 765)---
definitionCHROMAT_FILE: MSMg01no106_e08.b1 PHD_FILE: MSMg01no106_e08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:06:27 2005CHROMAT_FILE: MSMg01no106_e08.g1 PHD_FILE: MSMg01no106_e08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:06:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATTTTTNNNATTCATTGGNCGCTAAGACTCCTATAGGGAGAGGATCCGC
GGAATTCCATACTATACATATTCTTCCTGTATAATTACCTTGACTTAAGC
TAATTGAGGGAAACTTGCTTTGGCCATTTTGAGAAATTCTGGAATATTCT
TCATTAATATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTAT
CATCTGTCTATCTACCTACCTACCTATCTCTCCTTCTCTCGTCTTCTTCC
TCTCTTCTCCTCTCCTCTTCTCTCTTGCTCTCAAGTTCTTCATTAAATTT
AAATGTTTCCTCTCTGCTTTAAAGAATATTATTCTGCATTTGATGCAAAC
TATTAAGAAGACCATTAGATAAAACTAGTATTTTTTTATAGCAAAAGTAA
ATTTTATCTATTTTAGAATAGTATATTAAATCCAGTCTTCACTGGTTCCA
CAAGTCTCTTTGTAACAATAATTTCATCTCAATTTCTAGTATTATGCTTA
CTCACAAATGATGACACTGAAAGAGCCATATAAAACATCCTTAGACAAAG
CTCTTCCAAAAGGTTTGTGATTTAGCAGGCACAGGGGGAAATGTGGCTTA
TAATTGCCATATGGATAGTTGTCAGTACCTTGTACCTTCAGACCAATGAA
AACCAACAATAGCTGGAAATGCTTTCCCACAAAATTAAACATTTACACTT
GTATAACTGAGACTCAATCTTCTCTATTTCTTCCAACTCATTGTATCAAA
AACAACCTCTCCAAATGTCTGTTATTAGCAGAGTCCTTTAATGGACTGAA
ATTTTAGTCATTACAATTCATGCTCAAAGGATGTGGGTTGTTTGCTCATC
AAAAAAATGTCATTAGGACAACTTGCATCTGGTACCCCCAAATTTAATTT
ATTAACACACCCCAGTAATAACCAAGAGAATTGGAACTAATTTAATTCTG
AGGGATTCAAACTCTATCAGAAAACAATCCAAAATTTTTTGGGTATCAGG
TATTAAGCTTAGCAAGGACTCCTGCTTGTTAAAGGATGGGCTTTGTAGGG
GGGAACGTGTTATCCTGGGAAATGCCGGAAAACTGTTGTTTTTTTTCCTT
AAATCCAGGAATTTTCTAAGGGATGGAATTCTTACCGGAACTTAGATAAA
TTGCTTTTTCCTCCTTTTTAAATCCTCGGTGGGTGTAAAGACTTCTTTTT
ACCTTCCTCTCGGGGGAAAAACAAGAAACACTTCTTTTCTTGTATAATAG
AATAAAAAATCTTTTTACTTTCNAAATGTGTGATTTCGTTTATTCATNTA
TTATNACATATACTCGGTGTTGTGAA

NNCCACTCACTATTTAAATATGCAAGGGAGGXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGGAACCCATTTAGGA
GTGTCTAAAACACTGGAAGAAGGTTTCCAAAGAAACCCCCCCTCGAGCAT
TTTTAAAATGGGAAAAATGGAAACTTACTTTTCATTTTATCCCTTTCTCA
AAAAGGGGAAAAAAAAGGGGTGAGCAAAAAGATCTCGTTTCTTTTATCCC
TTTTAAAAGGGGGGGGGGAAAGAAATGTTGTTTCTCAACAAGGGCCCTTA
TGTAACATAAACCGGGCCCCACCTCTTATAAAATAAAAAGAAGAGGGCNC
CCCCATATCGTTGGAAAACAAAAAANAAAAAAAAAAACCTCCCCCAAATC
AGAAAATNNNTTCCTTGGTGTGTGGTGGGAAACAAAAAAACATCCTGGGG
GGTCAGGGCGCCCCCCCTGGTGTGTTTTTTTTTTAACGTTATAAACTATC
AATACATGTGGTGGGTGTGGTATACTCCACTTATTTAAATCGGATGAAAT
ATTGGATATGGTTTTATCGATCTTACACTCTNATGTNTNNTTATTATAAA
AATAATAGATTAGCGTGGTTCCTTCCCCTCTTCTCAATTTTTTTAACTTT
TTCTCATANATTTTCTTTATTTCCTTTATACTACCCACTCTTCCTTCATC
CAGTTTCTAAAATAAATATNTNNTTNNNTNTTNCTTTCTNTTTTTTTTTT
TTTTTTTTTTTTTCTTCCTNTCCNTCTCTCCTTCTCCTTTTCTTNTNCTC
ACAAATTAGTTCTATTGTTNTNTTNTNNNCNNNNNNTATATCATTTNTTT
CNCATTATTTTTTNNTTCTTTTTTTTTAATATGTTTTTCNTNCTCAATTA
TACTATATTTAAATATTATGTTTATTCTCTTTCTCNCTCCANTCTCAACA
CTCTAATTATNTATTATAATTATTTNTTTTTTANCATAATATTTCTCTCC
NTAACTTAGNTTTTACTNTTTTTNNNTTTTTTCTTTTCCCTTTTTCTTCT
CTCATCTTCTCCCCTTTTNTTTNNCNTNCACAAATCAGACATACTCCCAC
TTCTTTTTCTTCTTATTCTTATATACTCACCTCCAATCTCTCACCTNCTC
TCCNTNTCTATTCTTCTTCTTATATTATTTTTTTAATTCATATACTTATA
ACTAGCCCTACTTTTTTTTTTTTNTTCCCACCTTTTTTTTGTCTTTGCTT
GGTTTTTTGTTGTCTTNTCTCTTCCTCCTTTTTTCTTCTTCACCGTTATC
TTTCTTTTCTTTTTCATTACTTTCATATTCATCACATCCCGGGCCAACAA
ACATACAGTTTTNNCNCNNNNNNNNNCNNNNNNNNNNNNCCNCCTTTATT
TTCCTACTTANCCCCTNTNAACAACAAATTTTGTTCTTTNNTNCCNNCTN
NCNNNTNATTTTAATNTATCTTCTTTCTCCCNNCNNCNNNCNNCAAAAAC
ATTCGGTTNTTCNNNANCNTNNNNANANTACNNNNCATCTAATCTTCTTT
TATTCTCAATTCCTTCTTATTCTTCATTCNTTCTATCCCTTTCAAATATC
TATTTCATATTATATTATTACNTATATAACTCTTTNCAATTCTCTCACTT
CNCTAACTCAATATATGGTTNCTCNCNCNCNTCNNNCCNCNCCACNCNNC
ACCCACACCCTTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no106_e08.b1 MSMg01no106_e08.b1 CHROMAT_FILE:
MSMg01no106_e08.b1 PHD_FILE: MSMg01no106_e08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:06:27 2005
         (731 letters)



>mm_chr6_27893109_27894239
          Length = 1131

 Score = 1149 bits (594), Expect = 0.0
 Identities = 669/714 (93%), Gaps = 34/714 (4%)
 Strand = Plus / Plus

                                                                       
Query: 18  gaattccatactatacatattcttcctgtataattaccttgacttaagctaattgaggga 77
           ||||||||||||||||||||||||   | ||||||| |||||||||||||||||||||||
Sbjct: 218 gaattccatactatacatattcttaaaggataattatcttgacttaagctaattgaggga 277

                                                                       
Query: 78  aacttgctttggccattttgagaaattctggaatattcttcattaatatctatctatcta 137
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |      
Sbjct: 278 aacttgctttggccattttgagaaattctggaatattcttcattaatatcta-c------ 330

                                                                       
Query: 138 tctatctatctatctatctatctatctatcatctgtctatctacctacctacctatctct 197
                                    |||||||||||||||||||||||||||||||||||
Sbjct: 331 -------------------------ctatcatctgtctatctacctacctacctatctct 365

                                                                       
Query: 198 ccttctctcgtcttcttcctctcttctcctctcctcttctctcttgctctcaagttcttc 257
           |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ccttctttcctcttcttcctctcttctcctctcctcttctctcttgctctcaagttcttc 425

                                                                       
Query: 258 attaaatttaaatgtttcctctctgctttaaagaatattattctgcatttgatgcaaact 317
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 attaaatttaaatgtttcctctctgctttaaagaatattattctgcatttgatgcaaact 485

                                                                       
Query: 318 attaagaagaccattagataaaactagtatttttttatagcaaaagtaaattttatctat 377
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| 
Sbjct: 486 attaagaagaccattagataaaactagtatttttt-atagcaaaagtaaattttatctaa 544

                                                                       
Query: 378 tttagaatagtatattaaatccagtcttcactggttccacaagtctctttgtaacaataa 437
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 tttagaatagtatattaaatccagtcttcactggttccacaagtctctttgtaacaataa 604

                                                                       
Query: 438 tttcatctcaatttctagtattatgcttactcacaaatgatgacactgaaagagccatat 497
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 tttcatctcaatttctagtattatgcttactcacaaatgatgacactgaaagagccatat 664

                                                                       
Query: 498 aaaacatccttagacaaagctcttccaaaaggtttgtgatttagcaggcacagggggaaa 557
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 665 aaaacatccttagacaaagctcttccaaaaggtttgtgatttagcaggcacaggaggaaa 724

                                                                       
Query: 558 tgtggcttataattgccatatggatagttgtcagtaccttgtaccttcagaccaatgaaa 617
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 tgtggcttataattgccatatggatagttgtcagtaccttgtaccttcagaccaatgaaa 784

                                                                       
Query: 618 accaacaatagctggaaatgctttcccacaaaattaaacatttacacttgtataactgag 677
           |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 785 accaacaatagctgaaaatgctttcccacaaaattaaacatttacacttgtata-ctgag 843

                                                                 
Query: 678 actcaatcttctctatttcttccaactcattgtatcaaaaacaacctctccaaa 731
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 844 actcaatcttctctatttcttccatctcattgtatcaaaaacaacctctccaaa 897


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 731
Length of database: 1131
Length adjustment: 10
Effective length of query: 721
Effective length of database: 1121
Effective search space:   808241
Effective search space used:   808241
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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