BAC Information

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BAC

Clone NameMSMg01-106F02
Chromosome6 (Build37)
Map Location 14,034,656 - 14,035,043
singlet/doubletsinglet
Overlap genenone
Upstream geneTmem106b, Gm467, Gm725, 1700016P04Rik, LOC100040478, Tmem168, B630005N14Rik, Gpr85, 2610001J05Rik, LOC100041043
Downstream geneLOC100040513, LOC667797, Ppp1r3a, Foxp2, LOC100040568
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-106F02.T7 (MSMg01no106_f02.b1)MSMg01-106F02.TJ (MSMg01no106_f02.g1)
ACCAG320438AG320439
length1,2261,227
length of high quality
(start - end)
564 (127 - 690)278 (139 - 416)
definitionCHROMAT_FILE: MSMg01no106_f02.b1 PHD_FILE: MSMg01no106_f02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:06:34 2005CHROMAT_FILE: MSMg01no106_f02.g1 PHD_FILE: MSMg01no106_f02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:06:34 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NCCAATTCTTNNNNAACATTGGGCGCTAAGACTCCTAAGGGAGAGGATCC
GCGGAATTCAAGGTATTGATTTCTCCCTTTAATTACAGTTATGGGCAGTT
GCTTTAATAGTGATGCCTTGATTTAGCATAAATATCTTTTAAAATAAACT
GATTTCCATATTCACTGAAAATTTACTGATTATTCCTGAATTTTCTTTTA
TAAATGGACCCAGGAACAAATGGAAAACTACATGTGACTAAGTATGATAT
CACATCCCTCAGCACTGTGTTTGATGACAAAACTCAGTTGAGATGCTCAG
TGTTGAGCTGGCATTTGAGAAGAATGAATTATAGATTATTAACATGGAAA
AGAGCTTGAAGTTCATCTGTTACTTTGGTTGTGGAAGAGATCGGTTCTCA
TTAAGATTACTAACATGCCTAGGAATGTGTTTGGTTTATGCTTCAAGAAG
CACACAAGCATCTCTTGGAGAAGCCCTTCTCACTCCTCTTTCCAACCAAT
TATTTCTTTATTCACTTGCATTACTGTAATGGTGTTCTCTATGGTTGACC
AAAAACTATGCTTAATTTCCAAAAATTTTAATGTATTTTCTCTCCCACTA
AACTGTGAGTATCTCAGGACTGAATGCTGCCTGCTTCTGCCTTCCTGATC
TTTTTATTTTGTTCATGTTCAAAGGGCTTTAGTGTATGTATTTTAAGTAC
CATTATCTGAGCTCTTCAGAGTCTATGGAATATTTTACTGTTATGGAAAT
GAATACTGAGTTCTTTGAAGGACCACTAAGTTTGCTTCCTTATGTAAAAA
AAGAATTGTGCATTTACCCTGTTCCTGAGAAACTATCATATTTGTTTTTA
AGAAATGAACCAGTTCTGTGCCAATCCTCTTATTTTTTCCCCCTGGCAAA
TAATGAAGTTCTATTTCTGAACTTTTCTTACTTTTAAATGTGAAAAGGGG
GAATTTAGGCTAATTGGATGGTCCCTCAATTTTCCTAAGGAATTAACTCT
TTTAAAGTTTCACAACAAATTTGTTTGAATACCCATTAAACCTATGGGGG
TCTTATTTTTTTAAAATTTAAGCCTCATCCAAAATGGAATTTTATTCATA
ACATCCTCGGATTAATTGGGTGTCCATAAAAATATTAACCTCTTTTATAC
CTCTTTTTTCTTTAAACTAGAGTTGATATGCCCACGCCTTNTAATTACAC
CTTTACCCTCTCTCCAAAATGAAAAA
NNTTCGAAACCACATNNAAAGATCGGAGGCTGGGGXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXGGACCTATAAAGAGCCCCCAGA
TTAGACCTTAGTACAAGGAGATCCCATTAAAAACCCCAACTCAAAGAAAA
AAACCACATGATCATCTCAGATGCTGAGAAAGCATTTGACAAAATCCAAC
ACTCATTCATGATAAAAGTCTTGGAAAGATCAGAAATTCAAGGCCCATAC
CTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAGCATCAAAGT
AAATGGTGAGAAGCTTGAAGCAATCCCACTAAAATCAGGGACTAGACAAG
GCTGCCCACTTTCTCCCTACCTATTCAACACAGTACTTGAAGTCCTAGCT
AGAGCAATTAGAAAACATTTTTAGATCAAGGGGATACAAATTGGAAAGGA
AGATGTCAAAATATCACTTTTTGCAGACGATATGATAGTATATATACGTG
ACCCTAAAAATTCCACCAGAGAACTCCTAAGCCTGATAAACAGCTTCAGT
GAAGTAGCTGGATATAAAATTAACTCAAACAAGTCAATGGCCTTTCTCTA
CACAAAGGACAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCT
CAATAGCCACAAATAATATAAAATATCTTGGTGTGACTCTAACCATGGAA
GTGCAAGATCTGTATGACAAGAACTTCATGTCTCTGAAGAAAGAAACTAA
AGAAGATCTCAGAAGATGCAAAGACCTCCCATGCTCATGGATCGGCAGGA
TCAATATAGTAACAATGGGTATCTTGCCAAAAGCAATCTACAGAATTCCA
TGTCATCCCCCATCCAAAATTCCAATTCAATTCTTCAACGAAATAAAAAG
GGCAACTCCCAAAATCCTTCTGCAATACCAAAACACCCAGGGAAAGCAAA
AACCTCTTCCCAGGGAAAAAAAAACCCCCGGGGGGAAAATCCCAGGGCCG
AACCTAAAGGCGGTATCTACAAAATCAATTGGGAAAAAAAATCGGATGGG
TACCGGGTAAAGTGGGCCGAACACCGAAACCTCAGGGAAAAACAAATTGT
GAAACCCCAAAAAATAACCCCCCACCCCCCCAATGGCCCTCTTGGAACTT
TGGACCAAAAAAACCTTAAAATCCCCTCCTCGGTGCAAAATAAAACAAGT
GATTTTTCAAACCAAGGCGGGAGCGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no106_f02.b1 MSMg01no106_f02.b1 CHROMAT_FILE:
MSMg01no106_f02.b1 PHD_FILE: MSMg01no106_f02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:06:34 2005
         (564 letters)



>mm_chr6_14034456_14035421
          Length = 966

 Score =  731 bits (378), Expect = 0.0
 Identities = 385/388 (99%), Gaps = 2/388 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cataaatatcttttaaaataaactgatttccatattcactgaaaatttactgattattcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cataaatatcttttaaaataaactgatttccatattcactgaaaatttactgattattcc 260

                                                                       
Query: 61  tgaattttcttttataaatggacccaggaacaaatggaaaactacatgtgactaagtatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaattttcttttataaatggacccaggaacaaatggaaaactacatgtgactaagtatg 320

                                                                       
Query: 121 atatcacatccctcagcactgtgtttgatgacaaaactcagttgagatgctcagtgttga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atatcacatccctcagcactgtgtttgatgacaaaactcagttgagatgctcagtgttga 380

                                                                       
Query: 181 gctggcatttgagaagaatgaattatagattattaacatggaaaagagcttgaagttcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctggcatttgagaagaatgaattatagattattaacatggaaaagagcttgaagttcat 440

                                                                       
Query: 241 ctgttactttggttgtggaagagatcggttctcattaagattactaacatgcctaggaat 300
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 441 ctgttactttggttgtggaagagatcggttctcattaagattacaaacatgcctaggaat 500

                                                                       
Query: 301 gtgt--ttggtttatgcttcaagaagcacacaagcatctcttggagaagcccttctcact 358
           ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtgtgtttggtttatgcttcaagaagcacacaagcatctcttggagaagcccttctcact 560

                                       
Query: 359 cctctttccaaccaattatttctttatt 386
           ||||||||||||||||||||||||||||
Sbjct: 561 cctctttccaaccaattatttctttatt 588


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 966
Length adjustment: 10
Effective length of query: 554
Effective length of database: 956
Effective search space:   529624
Effective search space used:   529624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)