BAC Information

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BAC

Clone NameMSMg01-106N02
Chromosome6 (Build37)
Map Location 68,497,006 - 68,497,407
singlet/doubletsinglet
Overlap geneIgk
Upstream geneIgkv2-137, 4930515G16Rik, Igkv1-136, Igkv1-135, LOC723992, EG628006, Igkv14-134-1, Igkv17-134, EG628027, LOC384401, EG628042, EG243423, EG628056, EG628072, Igkv9-129, Igkv9-128, EG243433, Igkv14-126-1, LOC723993, EG628127, ENSMUSG00000050218, EG243431, EG628144, Igkv1-122, EG667435, EG434025, Igkv9-119, Igkv14-118-2, Igkv14-118-1, EG384405, Igkv11-118, Igkv1-117, EG434026, EG628206, Igkv11-114, Igkv2-113, LOC232047, EG381776, Igkv14-111, Igkv1-110, Igkv2-109, Igkv1-108, Igkv2-107, Igkv11-106, Igkv2-105, LOC384408, Gm1067, Igkv15-103, Igkv15-102, Igkv20-101-2, Igkv15-101-1, Igkv15-101, Igkv14-100, Igkv1-99
Downstream geneIgkv12-98, Igkv15-97, Igkv10-96, Igkv2-95-2, Igkv2-95-1, EG434031, EG667550, Igkv2-93-1, Igkv19-93, Gm1408, ENSMUSG00000056850, Igkv4-90, Igkv13-89-1, Igkv12-89, Igkv1-88, Igkv13-87, Gm459, Igkv13-85, Igkv13-84, Igkv4-83, Igkv13-82, Gm460, Igkv13-80-1, Igkv4-80, Gm194, EG628498, Igkv4-78, EG667621, Igkv13-76, Igkv4-75, Igkv13-74-1, LOC236047, Igkv13-73-1, EG628516, Gm1499, Igkv13-71-1, Igkv4-71, Gm1502, EG628541, Gm1419, Igkv12-67, Igkv12-66, Igkv4-65, Igkv13-64, EG628571, Igkv13-62-1, EG636752, Igkv13-61-1, Igkv4-61, EG667683, Igkv4-60, Gm1077, Igkv13-57-2, Gm1418
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-106N02.T7 (MSMg01no106_n02.b1)MSMg01-106N02.TJ (MSMg01no106_n02.g1)
ACCAG320799AG320800
length1,2831,289
length of high quality
(start - end)
335 (131 - 465)503 (141 - 643)
definitionCHROMAT_FILE: MSMg01no106_n02.b1 PHD_FILE: MSMg01no106_n02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:07:47 2005CHROMAT_FILE: MSMg01no106_n02.g1 PHD_FILE: MSMg01no106_n02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:07:47 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NCCGGTCTNTTCNTGTCAGTGGGCGCTATAXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTTGTTTAGCTTTGAGCCCTTTAACTTCCTTGGGTTAT
TTGATTTTCTGGAGTCCACCCCTTTTGAGTTCTTTATATATATTGGATAT
TAGTCCCCCATCTGATTTAGGTTAGGTAAAGATTCTTTCCCAATCTGTTG
GTGGCCTTTTTGTCTTATTGACAGTGTCTTTTGCCTTACAGAAACTTTGC
AATTTTATGAGGTCTCATTTGTCGATTCTCGATCTTACAGCAGAAGCCAT
TGCTGTTCTATTCAAGAATTTTTCCCCTGTGCCCATATCTTTGAGGCTTT
TCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGT
TCCTTAATCCATTTATATTTGACCTTAATACAAGGAAATAGGAATAGATC
AATTAGCATTATCCTACTTGATAACCACCTGTTTTGCCAGCACCATTTGT
TGAAAATGCTGTCTTTTTTCCACTGGATGGTTATAGCTCCCTTGTCAAAG
ATCAAGTGAACATAGGTGTGTGGGTTGATTTCTGGGACTTCAATTCTATT
CCACTGGTCTACTTGTCTGTTGCTATACCAGTACCATGACATTTTTATCA
CAGTTTCTTTGTAGTACAGCTTTAGTTCGGTCATGGTGATTCCACCAGAG
GTTCTTTTATTCCTTGAGAAGAGTTTTTGCTATCATAACATTTTTTATTC
CAGTTGAATTTGAAGACTGCCTCTTTCTATTTAAATCAAGAATTAGGTTT
GGTATTTTTGATGGGGGATTGCCATTTGATTCTGTTAAATTGTTCTTGGG
TAAGGAAACCCATTTTTTATTTAATATTGAATCCTGCCCAATTCTATGTG
TTATGGGGAGTATCTTTTCCATTCTTTTTTGAAATCCTTCTTTTGGGATT
TCTTTTCTTCTTAAAAACTTTGGTAAATTTCTTTATATCTTTCTAGAATT
TTTTTTCCTTCTCCTTTAAAAGTCCCTCCCCAATGGGTATTTTTAATATT
TAATTTTGCCGAACTTACTGGTTGAAAAGGGGTGGTTGTGTCTTCCCCCT
TAAATTAAACTTTTCTCTTCTTACTCTCGTTTTTTATTTCACTCTTGTGT
GTTACACACAAATAATTCTCTCCATTGTACACCTTGTCTTCTTCGTGTTT
ATTATCCTTATTATTTATTCCCCTTGCTTCTATCTTTTTCTACCTTGTAT
AATATCTCTTGCTTTATTATCCTATTGTTTCTT
CCAGATCCTATNCTAATATCACGCTGAGGCTGGXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCTTTTTAAGAGCCCCGAA
ACTTTTCAAATACATTGACGGTTTGACCTCTTAAATTTTGGCCTATCTCT
TAGAATGTAACAGATAATTTATACAGGCAAGAATCTTAACAAATATAATA
TATGCTGAAATATCTTTGACTTCATTTCAGGGCAGAAAAAATATGTAAAA
AAAATTTTTATGGGAAAAATTCTTTAGAATAAAAAGTAAATACTGAAGTC
ATAAACATATTGGATAGGTACATTTTTGCAATTTGCTAAAATCTAAATAT
ATAAGCATACACAGCTGTGACTATGTTCTCTCTCATGTACATATACATAT
GAGTGTGTGTGTAAAAGATATTTATAGAGAAAGAGAAAGAGAGAAAGGTT
AAAACATTATACAAATGTTTTCTTTTTTGACATTCATGTTCATGAGATCA
TGTCACAAAGTCTAATATATTTCATAGGCTGTTCCCAGAATAAAAGATGA
AGTGCTAGATCCATTTCTATTCAACTCTGTGGTATCAAAAGTAAATCTAA
AAGCTAGTATATTCTATATGATTCCACTGCAAAAGCAATCTCAATCTACT
GCAATTGTAAACTCATGATCATTGAAACACATGATAATTCCTGGGGATTC
TGCACAATTTTGGCTGCCAGACATGCTTTGGCTATATACACTTTCTACCT
TAATTTTTCTATTAATTAATTGAACCCTAATCACTCCAGAAATTTTGTAA
AATTTTTACCCACTTGCAACTGAAAAGACTTTTAAAACCCCCCTAAACTT
GGAAAAATTTGCTGTTTATCTAAAAAGTTTGCCTCATGTATTTCCTGAAA
AACTATGTTGTAATCGTCAATTTTCCCCTAACTTCTTTTTTTTTTTTTCT
TATTTTTCACCCAATAAATTTCCTCTCTTTATTTACACCTGTGTTGGTCT
CTGGCAACTTCTACTTCCGGTAAAAATTCAGGATGGTCCCTTCAAAATTT
TGGAAAAAAATTGGCTTGTCCTTCTAGTTCTCCCCATAATATTCTTGGTG
AAATTAAAAGGGACTTTATTTCCTCACTTCGGTTCCTCCATTGTTGATGG
TAATGTTTTAAATTTTTCCACATTATCCGAATTTTGTACATAATTATCTT
ACTGCCCTCAACACTTTTTCTATCTCTCCGTGGAATAACAATCCATAAAT
TCTTCTAATCACACTTGGGCCTTATCATCNTCTCTACCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no106_n02.g1 MSMg01no106_n02.g1 CHROMAT_FILE:
MSMg01no106_n02.g1 PHD_FILE: MSMg01no106_n02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:07:47 2005
         (503 letters)



>mm_chr6_68496936_68497838
          Length = 903

 Score =  549 bits (284), Expect = e-160
 Identities = 362/404 (89%), Gaps = 28/404 (6%)
 Strand = Plus / Minus

                                                                       
Query: 126 aaaattctttagaataaaaagtaaatactgaagtcataaacatattggataggtacattt 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 aaaattctttagaataaaaagtaaatactgaagtcataaacatattggataggtacattt 413

                                                                       
Query: 186 ttgcaatttgctaaaatctaaatatataagcatacacagctgtgactatgttctctctca 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 ttgcaatttgctaaaatctaaatatataagcatacacagctgtgactatgttctctctca 353

                                                                       
Query: 246 tgtacatatacatatga--gtgtgtgtgtaa-----------------------a-agat 279
           |||||||||||||||||  ||||||||||||                       | ||| 
Sbjct: 352 tgtacatatacatatgagtgtgtgtgtgtaagagagagagagagagagagagagagagag 293

                                                                       
Query: 280 atttatagagaaagagaaagagagaaaggttaaaacattatacaaatgttttcttttttg 339
           |   | ||||| ||||| |||||||| || |||||||||||| |||||||||||||||||
Sbjct: 292 a--gagagagagagagagagagagaagggctaaaacattatataaatgttttcttttttg 235

                                                                       
Query: 340 acattcatgttcatgagatcatgtcacaaagtctaatatatttcataggctgttcccaga 399
           ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 234 acattcatgtttatgagatcatgtcacaaagtctaatatatttcataggctgctcccaga 175

                                                                       
Query: 400 ataaaagatgaagtgctagatccatttctattcaactctgtggtatcaaaagtaaatcta 459
           |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 174 ataaaagatgaagtgctagatccatttctattaaattctgtggtatcaaaagtaaatcta 115

                                                       
Query: 460 aaagctagtatattctatatgattccactgcaaaagcaatctca 503
           ||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 114 aaacctagtatattctatatgattccactgtaaaagcaatctca 71


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space:   440249
Effective search space used:   440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)