BAC Information

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BAC

Clone NameMSMg01-108M23
Chromosome6 (Build37)
Map Location 84,607,265 - 84,687,470
singlet/doubletdoublet
Overlap geneExoc6b
Upstream geneCd207, Vax2os2, Vax2os1, Vax2, Atp6v1b1, 1700124L16Rik, Ankrd53, Tex261, LOC665004, Nagk, Paip2b, LOC384450, LOC622683, LOC380687, LOC665098, LOC676366, Zfml, Dysf, LOC665114, 4930504D19Rik, Cyp26b1
Downstream geneLOC665129, Npm3-ps1, EG545861, EG623016, Spr, LOC665086, LOC665089, Emx1, Sfxn5, Rab11fip5, Noto, Smyd5, 1700040I03Rik, Cct7, Fbxo41, Egr4, Alms1, LOC100043497, EG665134
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-108M23.T7 (MSMg01no108_m23.b1)MSMg01-108M23.TJ (MSMg01no108_m23.g1)
ACCAG322160AG322161
length725715
length of high quality
(start - end)		685 (41 - 725)643 (71 - 713)
definitionCHROMAT_FILE: MSMg01no108_m23.b1 PHD_FILE: MSMg01no108_m23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:47 2005CHROMAT_FILE: MSMg01no108_m23.g1 PHD_FILE: MSMg01no108_m23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,607,265 - 84,607,945)(84,686,831 - 84,687,470)
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACAGAATCCGCGGAATT
CAGATTGGCCCCATCTGAGCAGCTTGAGGCAAATAAATATACTGCTCAGT
CAGGCTTTCCCTGGCCATTTGGTGGACTTGGCATCTAGTGAGCAGGATAC
TCTGGAATGCACACCATTCCAAGCACCACAGAGGTCTTGTATTTCAAGAC
TGCTTGTTTATAAACATAGCCACTTTCTGGAGTGAATTCCTCTACTTTTT
GGTTTGTTTAGCTACAATTTTTTTTCAAAGAACAAGAGCCTAAAATAAAG
AGAGTTTTAGATTAATGTCTAAATATATGCATTAAAGTAATAAAAGGCAC
CAGAAATGTATGCTGAACAAACATGTAGTCTAAGTTCACCAGCAACCAAG
GGGATGGGCATGAAAGCACCTAGTAGGTGCGCTATTTTACATGTGAGAAT
CAGCAAATCAATTATAAGTAGTCTCCAGGGCTGTAAACAAGTACATCCTC
CAAGGCCAACAGTGTTGCAGCAGGACAGTCAGGAGAATCACACAAACCAG
GCACTCTCCTGCCACAGGAGTCTACCCATGGAAATCCACCTGCCTCAGGA
GTCTACCCATAGAAATTCACCTGCCTCAGAGTCTCCCCATGGAAATCCAC
CTGCCACAGGAGTCCACCCGTGGAAATCCACCTGCCACAGGAGTCTACCC
ATAGAAATCCACCAAAGAGAATCAA

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCACTATGTTCTGATTCCCTTTTTTAAAAAG
GCCAATTCAGGTGCTCTTCCCCATATTTAATAACTGGCGTGTATATGCAT
ACCTACAAATTTGAAACTTTGGGGTTTTTTGACACAGTCCCAACTTTAAG
AAGAGAGGTAGGAGATTCATCACAGATGTGTCTCCCTGTGAGCAGTGTTG
GAGGTTGTGTTGACGCTAGCTGAGTGAAAGCACCGTGGTTCTGAATACTG
ACCTGAGGTCTGCTAGCTCTACTATCTAGGGTCAGACTGGAGAACACTCA
GTCCAAAGAGGAAGCAGCAGAGCCAGGCCTGAAACTTGTCTCACACCTAC
ATCACTGAATCTCTGACAGCCACTGGAGGGCAGCAGTGAGAGACAGCAAA
GGTCTAGATTTAGGGAATTGGGGCATATTTCATTTTGGGGAAAATAAAAC
GAAACAGCAACAACAACAAACCTTTGCTATAAACTATTCCAAGCTCCTTA
GACTCCTGGGGTGCAAGTGCCCAAAAGAATCCAGAGAGCCCTAACTTAAA
GATTTCTTCTAGGCAAGTTCAGAAACCATGAGTGGATAAAGGAATAAAGA
AAGACTGATGAGAAAGGAGAAGCAAATGGCTTCAGTGAAGGAAGGAAACC
AGAAGGACAGTCTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no108_m23.b1 MSMg01no108_m23.b1 CHROMAT_FILE:
MSMg01no108_m23.b1 PHD_FILE: MSMg01no108_m23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:47 2005
         (685 letters)



>mm_chr6_84607061_84608145
          Length = 1085

 Score = 1317 bits (681), Expect = 0.0
 Identities = 681/681 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   ggaattcagattggccccatctgagcagcttgaggcaaataaatatactgctcagtcagg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattcagattggccccatctgagcagcttgaggcaaataaatatactgctcagtcagg 264

                                                                       
Query: 65  ctttccctggccatttggtggacttggcatctagtgagcaggatactctggaatgcacac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctttccctggccatttggtggacttggcatctagtgagcaggatactctggaatgcacac 324

                                                                       
Query: 125 cattccaagcaccacagaggtcttgtatttcaagactgcttgtttataaacatagccact 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cattccaagcaccacagaggtcttgtatttcaagactgcttgtttataaacatagccact 384

                                                                       
Query: 185 ttctggagtgaattcctctactttttggtttgtttagctacaattttttttcaaagaaca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttctggagtgaattcctctactttttggtttgtttagctacaattttttttcaaagaaca 444

                                                                       
Query: 245 agagcctaaaataaagagagttttagattaatgtctaaatatatgcattaaagtaataaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agagcctaaaataaagagagttttagattaatgtctaaatatatgcattaaagtaataaa 504

                                                                       
Query: 305 aggcaccagaaatgtatgctgaacaaacatgtagtctaagttcaccagcaaccaagggga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aggcaccagaaatgtatgctgaacaaacatgtagtctaagttcaccagcaaccaagggga 564

                                                                       
Query: 365 tgggcatgaaagcacctagtaggtgcgctattttacatgtgagaatcagcaaatcaatta 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgggcatgaaagcacctagtaggtgcgctattttacatgtgagaatcagcaaatcaatta 624

                                                                       
Query: 425 taagtagtctccagggctgtaaacaagtacatcctccaaggccaacagtgttgcagcagg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 taagtagtctccagggctgtaaacaagtacatcctccaaggccaacagtgttgcagcagg 684

                                                                       
Query: 485 acagtcaggagaatcacacaaaccaggcactctcctgccacaggagtctacccatggaaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 acagtcaggagaatcacacaaaccaggcactctcctgccacaggagtctacccatggaaa 744

                                                                       
Query: 545 tccacctgcctcaggagtctacccatagaaattcacctgcctcagagtctccccatggaa 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tccacctgcctcaggagtctacccatagaaattcacctgcctcagagtctccccatggaa 804

                                                                       
Query: 605 atccacctgccacaggagtccacccgtggaaatccacctgccacaggagtctacccatag 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 atccacctgccacaggagtccacccgtggaaatccacctgccacaggagtctacccatag 864

                                
Query: 665 aaatccaccaaagagaatcaa 685
           |||||||||||||||||||||
Sbjct: 865 aaatccaccaaagagaatcaa 885


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1085
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1075
Effective search space:   725625
Effective search space used:   725625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no108_m23.g1 MSMg01no108_m23.g1 CHROMAT_FILE:
MSMg01no108_m23.g1 PHD_FILE: MSMg01no108_m23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:47 2005
         (643 letters)



>mm_chr6_84686631_84687670
          Length = 1040

 Score = 1180 bits (610), Expect = 0.0
 Identities = 634/644 (98%), Gaps = 5/644 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cactatgttctgattccctttttt-aaaaaggccaattcaggtgctcttccccatattta 59
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 840 cactatgttctgattcccttttttaaaaaaggccaattcaggtgctcttccccatattta 781

                                                                       
Query: 60  ataactggcgtgtatatgcatacctacaaatttgaaactttggggttttttgacacagtc 119
           ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 atacctggcatgtatatgcatacctacaaatttgaaactttggggttttttgacacagtc 721

                                                                       
Query: 120 ccaactttaagaagagaggtaggagattcatcacagatgtgtctccctgtgagcagtgtt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 ccaactttaagaagagaggtaggagattcatcacagatgtgtctccctgtgagcagtgtt 661

                                                                       
Query: 180 ggaggttgtgttgacgctagctgagtgaaagcaccgtggttctgaatactgacctgaggt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 ggaggttgtgttgacgctagctgagtgaaagcaccgtggttctgaatactgacctgaggt 601

                                                                       
Query: 240 ctgctagctctactatctagggtcagactggagaacactcagtccaaagaggaagcagca 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 ctgctagctctactatctagggtcagactggagaacactcagtccaaagaggaagcagca 541

                                                                       
Query: 300 gagccaggcctgaaacttgtctcacacctacatcactgaatctctgacagccactggagg 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 gagccaggcctgaaacttgtctcacacctacatcactgaatctctgacagccactggagg 481

                                                                       
Query: 360 gcagcagtgagagacagcaaaggtctagatttagggaattggggcatatttcattttggg 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 gcagcagtgagagacagcaaaggtctagatttagggaattggggcatatttcattttggg 421

                                                                       
Query: 420 gaaaataaaacgaaacagcaacaacaacaaacctttgctataaactattccaagctcctt 479
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 420 gaaaataaaacgaaacagcaacaacaacaaacctttgctataaactattccaagctccct 361

                                                                       
Query: 480 agactcctggggtgcaagtgcccaaaagaatccagagagccctaacttaaagatttcttc 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 agactcctggggtgcaagtgcccaaaagaatccagagagccctaacttaaagatttcttc 301

                                                                       
Query: 540 taggcaagttcagaaaccatgagtggataaaggaataaagaaagactgatgagaaaggag 599
           |||||||||||||||||||||| ||||||||||||||||||    ||| |||||||||||
Sbjct: 300 taggcaagttcagaaaccatgaatggataaaggaataaaga----ctggtgagaaaggag 245

                                                       
Query: 600 aagcaaatggcttcagtgaaggaaggaaaccagaaggacagtct 643
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 aagcaaatggcttcagtgaaggaaggaaaccagaaggacagtct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1040
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1030
Effective search space:   651990
Effective search space used:   651990
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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