BAC Information

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BAC

Clone NameMSMg01-108P18
Chromosome6 (Build37)
Map Location 79,773,097 - 79,773,332
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC384440, LOC621815
Downstream geneLOC100043392, Lrrtm4, LOC100043390
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-108P18.T7 (MSMg01no108_p18.b1)MSMg01-108P18.TJ (MSMg01no108_p18.g1)
ACCAG322283AG322284
length699725
length of high quality
(start - end)
237 (77 - 313)334 (77 - 410)
definitionCHROMAT_FILE: MSMg01no108_p18.b1 PHD_FILE: MSMg01no108_p18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:01 2005CHROMAT_FILE: MSMg01no108_p18.g1 PHD_FILE: MSMg01no108_p18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATCTATAATATCNGGCGCTAAANGAGTCANATTTCCTACTCGTCGGNGG
NAATCAACTCTTTCTNCACGAGTGGCAAACATTAATATAATATAAAATTT
AGATAATAAAAATAAATTGCCTTAAGCTATAGAGCCCCAAATCATGAGGA
AATGGATGAAGATATATTTAAGGAATACTACTAGGCAGAATATTATCAAA
ATAATTCTTCATGGACATGGACTGAAATAACTTAAGAATTCAAGGTTGTT
TCTTTCATACAAAATAATAAATAATTCCTTTATTTGGCATATTACTACTG
AAAATTCTCTTTTTACCTAGTTGACTATATAGAAGACAAATTCAAAAATA
TCTTTCTTCTTACCCCCCCCATTTTAAATAAAGGGAGCAAATAAAATGAT
ACTGAGAATAATTTTTAATTTATAAAGTAGACTAAAGTATGACAATTCTC
TTTAAACAGAATAAAATATGAGGGGGAGGAAAATCTGGTCATCATGATTT
ATCTCTGAAATCACAGAAGTACGGAAACAGACAGAATTGCCACTGTCATT
CTGGGCTACATAGTCATAGGCTAGCCTATGTTATAAAGCTAAATTCTATC
CATGAAAAATAATAAAGATGTTGATATATGGAGGCATGTTGACTTGTATT
TTTTTATTCCAGGATCCCAGGATAACAGGAGCTTGGTCACATCAGGATC
TAAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAATAACTCACTTAAAGAGATACAG
GAGAACACTGCTAAAGAGTTACAAGTCCTTAAAGAAAAACAGGAAAACAC
TGCTAAAGAGTTACAAATCCTTAAAGAAAAACAGGAAAACACAACCAAAC
AGGTAGAAGTCCTTATAGAAAAACAGGAAAACACATCCAAACAGGTGATG
GAAATGAACAAAACAATACTAGACCTAAAACGGGAAGTAGACACAATAAA
GAAAACCCAAAGTGAGGCAACGCTGGAGATAGAAACCCTAGGAAAGAAAT
CTGGAACCATAGATGCCAGCATCAGCAACAGAATACAAAAGATGGAAGAG
AGAATCTCAGGTGCAGAATACTCCATAGAGAACATCGGCACAACAATCAA
AGAAAATGGAAAATGCAAAAAGATCCTAACTAAAAACATCCAGGAAATCC
AGGACATTATGAGAAGACCTAACCTATGGATAATAGGAGTGGATGAGAAT
GAAGATTTTCAACTCAAAGGACCAGCCAACATCTTCTACTAACTTATTGA
CGAAAACTTCCCAAACCTACAGAAAGAGATGCCCCTGAACCTACAATAAG
CCTATTGAACTCCAAATAGACTGGACCAGAATAGAAATTTCCTCCCGACC
CATACTTATTAGAACTTCCTATGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no108_p18.b1 MSMg01no108_p18.b1 CHROMAT_FILE:
MSMg01no108_p18.b1 PHD_FILE: MSMg01no108_p18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:01 2005
         (237 letters)



>mm_chr6_79772897_79773533
          Length = 637

 Score =  402 bits (208), Expect = e-117
 Identities = 229/236 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaacattaatataatataaaatttagataataaaaataaattgccttaagctatagagcc 60
           |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||
Sbjct: 201 aaacattaatataatataaaatttagataataaaaataaattggattaagctatagagcc 260

                                                                       
Query: 61  ccaaatcatgaggaaatggatgaagatatatttaaggaatactactaggcagaatattat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaaatcatgaggaaatggatgaagatatatttaaggaatactactaggcagaatattat 320

                                                                       
Query: 121 caaaataattcttcatggacatggactgaaataacttaagaattcaaggttgtttctttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||  ||
Sbjct: 321 caaaataattcttcatggacatggactgaaataacttaagaattcaaagttggctcaatc 380

                                                                   
Query: 181 atacaaaataataaataattcctttatttggcatattactactgaaaattctcttt 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atacaaaataataaataattcctttatttggcatattactactgaaaattctcttt 436


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)