BAC Information

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BAC

Clone NameMSMg01-109E20
Chromosome6 (Build37)
Map Location 126,677,577 - 126,677,927
singlet/doubletsinglet
Overlap genenone
Upstream geneTmem16b, Ntf3, LOC100043565, LOC667427, LOC100043567, Kcna5, Kcna1
Downstream geneKcna6, LOC667463, Ndufa9, Akap3, Dyrk4, Rad51ap1, D6Wsu163e, LOC667473, LOC624256, Fgf6, Fgf23, 9630033F20Rik, Ccnd2, Tpi-rs11, EG243642, LOC100043578, EG640703, LOC100043848, Parp11, Efcab4b, Prmt8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-109E20.T7 (MSMg01no109_e20.b1)MSMg01-109E20.TJ (MSMg01no109_e20.g1)
ACCAG322523AG322524
length699764
length of high quality
(start - end)
351 (86 - 436)---
definitionCHROMAT_FILE: MSMg01no109_e20.b1 PHD_FILE: MSMg01no109_e20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:28 2005CHROMAT_FILE: MSMg01no109_e20.g1 PHD_FILE: MSMg01no109_e20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCCCCCCACTCCCCNNNTTACTATAATTGCGGCGCTATACGATCACTTT
CAAAAGAGGACCGCGGAATTCTTCTTCCCTTTTCAATGTATCCTGCTGGT
ACTTGATGTAACAGGACTGCAAACATTCCAAAGAGCCACTGCGGGGCGTC
TACCCCTTAGGAGTTGACCTACATTACCACTACAGGGTGTCTACTTCTTA
TGAGTGGTCCTAAAGTGTCACTTTTGGTTCATGGGTCAGATGTAACCTAA
CTTCAAGAAACAGTACTTTATACACAGGTCTCGAGTTTGGGTGTCTTCCT
TTTGAAAGACAAGATGTCTGGCCTCATAGGTTCTATGTTCAGCCTGCTAA
CTACCCGGGAGGAGCTGAGACTCCCAAATGACATCTTATAAGTTTTTGTT
ACTTTCCAGTAGTGGGAGGCTTTTGGAGAGCATTAAAGATACAAGCTGTA
ACCCACCATTCCATTCCTGCTGCCCAGGACAGACACGGATTTAGAACATG
GACTCAGAAGTGAGAGTGAGTGGATTTCCGAGATGAGGGTTGGCACTTGG
TACCCACCTGTCCAGTTCTGTGGGACGTCCTGCTCATCCCTGGCTTCTTG
CTTGCCTCTCTGCCTAGGATGTTTGCAATTGGCTCTCACTATGTCATATT
CTGAATATGCCATGCCCCTCAAGGCTTCTATAGCGCATGCTTGGGTCCT
CCCCGATGACAGCGCGAGGCCTGGCGACCGCCTGGTTCAAAACAAGGGGN
GACCTATAGAATTTCCCCAAAATTCAGAGTGACGCAGGNGACAGGTGCAC
AGAATCACTCCAAATACTTTTTCCCCACGCTGAGATACACTGGTAATGTC
TAAGCTGGGTCTTTACAGACTGCACCATACTTGTCTAGTGCAAATACATC
ATGATTTACAGGCTTCTGTAAAGGGCCTGCGCATCTATAGGTTTAATGAC
TCATTTATATTACACTTCACCTGTCAGTATTTCTCAAATCCTATGATTTG
TTCTGTGATGTTAGGACAAATGTTTTCTGATCATTATATATCTTGTGACA
AGAATCTGGCAGACATATGCCAAAAAACATCCTGTCCTCCATGATTATTC
TTGCTGTGCTGTATTACTTATTGCCTCTCATTATCTCATCTTTATATTAT
TGACTTTGTTTATTCTAATTAAATCATAATCTTAACTCATTTTATTTTTA
TAATTGTTTATTCACAATTCATTTTACATTTCATATCATATTAATAAATT
ATATCTTCTCTTTTATATTTATTCAATTTATTTGTCCATTTTGTTTTACT
CTTATTATATATGATACATCTTTCATTTTTTAATCTAAATTCCAACTCAT
ACCAATATTATTATTACCCTTTATTCTTTCTTTTTATCATCTTTCCTCAT
ATTCTCATATATTTCTTCTTTTAATTTACAAACTTTTACTTATTTTTTAC
ATAATACTTCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no109_e20.b1 MSMg01no109_e20.b1 CHROMAT_FILE:
MSMg01no109_e20.b1 PHD_FILE: MSMg01no109_e20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:28 2005
         (351 letters)



>mm_chr6_126677377_126678127
          Length = 751

 Score =  617 bits (319), Expect = 0.0
 Identities = 343/351 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgtatcctgctggtacttgatgtaacaggactgcaaacattccaaagagccactgcggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 atgtatcctgctggtacttgatgtaacaggactgcaaacattccaaagagccactgcggg 492

                                                                       
Query: 61  gcgtctaccccttaggagttgacctacattaccactacagggtgtctacttcttatgagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 gcgtctaccccttaggagttgacctacattaccactacagggtgtctacttcttatgagt 432

                                                                       
Query: 121 ggtcctaaagtgtcacttttggttcatgggtcagatgtaacctaacttcaagaaacagta 180
           |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct: 431 ggtcctaaagtgtcacttttggttcatgggccagatgtaacctaacttcaagaaacagca 372

                                                                       
Query: 181 ctttatacacaggtctcgagtttgggtgtcttccttttgaaagacaagatgtctggcctc 240
           |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct: 371 ctttatacacaggtctcgagtttgggtgtctttctttcgaaagacaagatgtctggcctc 312

                                                                       
Query: 241 ataggttctatgttcagcctgctaactacccgggaggagctgagactcccaaatgacatc 300
           |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ataggtcctatgttcagcctgataactacccgggaggagctgagactcccaaatgacatc 252

                                                              
Query: 301 ttataagtttttgttactttccagtagtgggaggcttttggagagcattaa 351
           ||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ttaaaactttttgttactttccagtagtgggaggcttttggagagcattaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 351
Length of database: 751
Length adjustment: 9
Effective length of query: 342
Effective length of database: 742
Effective search space:   253764
Effective search space used:   253764
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)