BAC Information

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BAC

Clone NameMSMg01-109F22
Chromosome6 (Build37)
Map Location 13,251,849 - 13,252,314
singlet/doubletsinglet
Overlap genenone
Upstream geneThsd7a, LOC667735, LOC384350, Tmem106b, Gm467, Gm725
Downstream gene1700016P04Rik, LOC100040478, Tmem168, B630005N14Rik, Gpr85, 2610001J05Rik, LOC100041043, LOC100040513
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-109F22.T7 (MSMg01no109_f22.b1)MSMg01-109F22.TJ (MSMg01no109_f22.g1)
ACCAG322573AG322574
length739725
length of high quality
(start - end)
179 (85 - 263)465 (84 - 548)
definitionCHROMAT_FILE: MSMg01no109_f22.b1 PHD_FILE: MSMg01no109_f22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:34 2005CHROMAT_FILE: MSMg01no109_f22.g1 PHD_FILE: MSMg01no109_f22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTCCNNATGATCAATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCA
GAAATCCGCGGAATTCATGATGATTTTCCTTAAATATTTTTTTTCCAAAT
TTTTATTAGGTATTTTCTTCATTTACATTTCAAATGCTATACCGAACGTC
CCCTATACACTCGCCCCACCCTGCTCCCATACACACCCACTCCTATTTCT
TGACTCTGCTATTCCCCTGCATATAAAGTTTGCAAGACCAAGGCGCCTCT
CTTCCCAATGATGGCTGACTAGTCCATCTTCTGCTATATATGTAGCTAGA
CGACACAAGCTCTGGGTTCACTGCCTAGTTCATGTTGTTGTTCCACATAT
AGGGTTGCAGACCCCTTCAGCTCCTTGTATTTTTTCCCCCCCTCCTCCAT
TGGCGGTCCTGTGTTCCATCCCATAACCTACCATCAATATATACAACCGC
CCTCGCTAGTCATTGTCCTAAACTCTCTACCAGATTTACCTATCATTATC
CTTTCAACCATCATTCCCTGTTCTATGCTATAATGTCTCGAACTCCCTCC
TTTCCTTCTTTAACGTACCCCTCCCCCATTTTACCTTTTTCTGCTCCCCC
CCTTTCCCTTCCTCCCCTTATCCCCTTCCTTTACCCTTCCCCATCCCCCG
TTTCCCTTTCCCACTTTTCTTTTTCCGTCTTTCTTTTCCCATTCCCCTCT
CCTCCTTTTCCCCTTTTCCCACCCCCCCTTCCTTACCCG
TTTCTNTTTTCTATGATGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGGGCCAATAAAGTGG
AAGTAGTCTATTGCAGGCATAGATCCCAGAGATGTTGAATGGGCAGCATA
CAACCCTGGGAATTACTGCCTGTTGCAGTGTTAGTAGGCATTGACCAAGA
TAATTCATTGTGTGTTGAAGAAGAGGATATTTCCTGTACAGCAAGAGAAC
TTTAAAGTTCGCATGGAGAGGGTGTGCATGTCACAGTGCACATGTAGAGG
TTAGAGTACTGCCTTTTGTGTCAAGCCTCACCTTCTACTTTGTTTGAGAC
AGGATCTCCTGTTTTTCTACTGTGAATGCCAGTTTAGTGGGGTCATAAGC
TTCCACAGACTCAAGAGAGTCTGCCTCCCAACTCATCCTATGGGAACTGG
CATTATAAATGCTTGCATGTAGGCATGTCTTTTGTGTGATCTGGATATTC
AAACATGGGTTCTCACAGTTTCCCAGCAAATGGTTTTACCCATGTGTAGA
TAGTAGCTAATCAATCAGATATTGCATGTCTAGACACTCTGACCTGTGGG
AAAACAAAAAGAATACCTAAATTTTTAAAATTTGGAAATATATTATACAA
CTGTGGTGTGTTTGTNAGCACATTTCTTCCCATAGCTTGGATAGTTGAGT
AGATGTGCTTACTTGGTTTGCAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no109_f22.g1 MSMg01no109_f22.g1 CHROMAT_FILE:
MSMg01no109_f22.g1 PHD_FILE: MSMg01no109_f22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:34 2005
         (465 letters)



>mm_chr6_13251650_13252514
          Length = 865

 Score =  878 bits (454), Expect = 0.0
 Identities = 463/466 (99%), Gaps = 1/466 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgggccaataaagtggaagtagtctattgcaggcatagatcccagagatgttgaatggg 60
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 200 atgggccaataaagtggaagtagtctattgcaggcagagatcccagagatgttgaatggg 259

                                                                       
Query: 61  cagcatacaaccctgggaattactgcctgttgcagtgttagtaggcattgaccaagataa 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 cagcatataaccctgggaattactgcctgttgcagtgttagtaggcattgaccaagataa 319

                                                                       
Query: 121 ttcattgtgtgttgaagaagaggatatttcctgtacagcaagagaacttt-aaagttcgc 179
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 320 ttcattgtgtgttgaagaagaggatatttcctgtacagcaagagaacttttaaagttcgc 379

                                                                       
Query: 180 atggagagggtgtgcatgtcacagtgcacatgtagaggttagagtactgccttttgtgtc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 atggagagggtgtgcatgtcacagtgcacatgtagaggttagagtactgccttttgtgtc 439

                                                                       
Query: 240 aagcctcaccttctactttgtttgagacaggatctcctgtttttctactgtgaatgccag 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aagcctcaccttctactttgtttgagacaggatctcctgtttttctactgtgaatgccag 499

                                                                       
Query: 300 tttagtggggtcataagcttccacagactcaagagagtctgcctcccaactcatcctatg 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tttagtggggtcataagcttccacagactcaagagagtctgcctcccaactcatcctatg 559

                                                                       
Query: 360 ggaactggcattataaatgcttgcatgtaggcatgtcttttgtgtgatctggatattcaa 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ggaactggcattataaatgcttgcatgtaggcatgtcttttgtgtgatctggatattcaa 619

                                                         
Query: 420 acatgggttctcacagtttcccagcaaatggttttacccatgtgta 465
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 acatgggttctcacagtttcccagcaaatggttttacccatgtgta 665


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 865
Length adjustment: 10
Effective length of query: 455
Effective length of database: 855
Effective search space:   389025
Effective search space used:   389025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)