BAC Information

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BAC

Clone NameMSMg01-109G20
Chromosome6 (Build37)
Map Location 91,669,070 - 91,807,619
singlet/doubletdoublet
Overlap geneSlc6a6, Grip2
Upstream geneLOC100043646, EG665685, Nup210, Hdac11, Fbln2, LOC665716, Wnt7a, LOC100043659, LOC625420, Chchd4, Tmem43, Xpc, Lsm3
Downstream geneC130022K22Rik, 4930590J08Rik, Fgd5, Nr2c2, Mrps25, Zfyve20, Trh, LOC665805, Prickle2, LOC545866, A730049H05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-109G20.T7 (MSMg01no109_g20.b1)MSMg01-109G20.TJ (MSMg01no109_g20.g1)
ACCAG322615AG322616
length707719
length of high quality
(start - end)
343 (87 - 429)161 (156 - 316)
definitionCHROMAT_FILE: MSMg01no109_g20.b1 PHD_FILE: MSMg01no109_g20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:39 2005CHROMAT_FILE: MSMg01no109_g20.g1 PHD_FILE: MSMg01no109_g20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,669,070 - 91,669,412)(91,807,459 - 91,807,619)
sequence
TTTCCCCCTTCTCCCCTTTTTTCTAAATTTGCGGCGCTAAACGACTCCTA
TTCCAAGAGATCCGCGGAATTAAGGTCTACCTGGGACACATGAGACCCTG
TCTTCCCCCTCAGCACACCTCCCTTCCTGTCCTCCAAAGAATGACAGAAT
GGGAAACAGTTCTGAAATAGGTTAGCCTGCGTGCTAAAAACACCTGATGT
TTTTAACCTGGCCAGAGGGTACAAAAGTACATCTGGCTGATGTCACTGGC
CCCGGGGTCAACCTGACTGTGTATGTGGCAAAACTTGTCAGTGATCTTCA
CGCAAGCCAGCATTCAGGCACAGCTACATCTGGCTTGCTACCCCTGGAAA
AGGGACAGTGTTTTCAGTATGGGGAGGGACACTTACCCCTGGAGCTTATA
ACTCCATGCATTCTAATCACCTGTAGCTGTGGTAACCACGAGGACGCTCC
CAGAATGAGAATTAGGGATCTACACCACTGCAGAACAACCCCATGCAGGC
CCTGAGTCAAGAGAAAACAGCTCCTGGCTTGTAGAAGCATGCTGCAAGCA
GATGGTGTGAAAGGGCCTCACTGCACTGTGTTGTGGCCACTTGATCACTA
TGGGGGTGGACTGGTCTAAGTGTGAGTCTGCAAAGGCTGTACCCTATCGA
GGATGTCTCAAGAAGTCAGTCTGACTCAGCATAGGGCTGGCAGAGGTAGA
CTCCTGT
GGGGACGATGCAGTGNGAGGCCTGGCGACCGCCTGGTTCACAAATGGAGG
TGACCTATAGAATTTCCGCGAAATTCAAGTGAATACTTGACATCTGTCTC
CCTAGCTAGAGCAAAACTCAGCACAAAGGTTCTACGTGCACATCGATCCT
GTGTGTCCACAGATACTGGTCTGACATGCAGTGGGCGTTCATCAAATATT
AAGCTCGCTCCAGCTGACTTCCCTACAGCTCTGTTCACCAGCCTTTGCCT
GAGGTAAGTTGGGAATGCTGGTGAGCAGGCTTCCCATTCTGAATTGGATA
TGCCTTGGATGCAGCCAGATTCTCTGCCCCAGCTATGCCTAGGGACAGTC
TGTGCCACAGCATGTTGCCCTGCAGACAGAAACATCTGTCTAATGTCCAA
CGACAACTAGGAACCTCTGTCACACATCACCCCCTGGAGTGTTCTGTTAT
TATACAGGTTAAGATGATGTTGCGGCTATAAATTCTGCCACGCTGTACGC
TAGGCATTCCTTATTGGACAAACTCCAGCCTATAGTTCTTCAAGGAAAGT
TAGGCTTGCCTCTTTAAGGGATGAATTAGAGATTTTTTTCATAGTTGTTA
AACTAGGTTCCTAGCCTCCCTCGCTGTTTTTCTCGTTCAAGATGACTTCT
TTACTTACTGATTTCTAATACTATCTCTATATCCCTATCTTTGCCTCTTT
ATATATAGAGTCTTATACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no109_g20.b1 MSMg01no109_g20.b1 CHROMAT_FILE:
MSMg01no109_g20.b1 PHD_FILE: MSMg01no109_g20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:39 2005
         (343 letters)



>mm_chr6_91668870_91669612
          Length = 743

 Score =  640 bits (331), Expect = 0.0
 Identities = 340/343 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacatgagaccctgtcttccccctcagcacacctcccttcctgtcctccaaagaatgaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacatgagaccctgtcttccccctcagcacacctcccttcctgtcctccaaagaatgaca 260

                                                                       
Query: 61  gaatgggaaacagttctgaaataggttagcctgcgtgctaaaaacacctgatgtttttaa 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 261 gaatgggaaacagttctgaaataggttagcctgcgtgctaaaaacatctgatgtttttaa 320

                                                                       
Query: 121 cctggccagagggtacaaaagtacatctggctgatgtcactggccccggggtcaacctga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctggccagagggtacaaaagtacatctggctgatgtcactggccccggggtcaacctga 380

                                                                       
Query: 181 ctgtgtatgtggcaaaacttgtcagtgatcttcacgcaagccagcattcaggcacagcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgtgtatgtggcaaaacttgtcagtgatcttcacgcaagccagcattcaggcacagcta 440

                                                                       
Query: 241 catctggcttgctacccctggaaaagggacagtgttttcagtatggggagggacacttac 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 441 catctggcttgccacccctggaaaagggacagtgttttcagtatggggagggacacttag 500

                                                      
Query: 301 ccctggagcttataactccatgcattctaatcacctgtagctg 343
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccctggagcttataactccatgcattctaatcacctgtagctg 543


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space:   245156
Effective search space used:   245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no109_g20.g1 MSMg01no109_g20.g1 CHROMAT_FILE:
MSMg01no109_g20.g1 PHD_FILE: MSMg01no109_g20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:39 2005
         (161 letters)



>mm_chr6_91807259_91807819
          Length = 561

 Score =  296 bits (153), Expect = 5e-85
 Identities = 159/161 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccacagatactggtctgacatgcagtgggcgttcatcaaatattaagctcgctccagct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tccacagatactggtctgacatgcagtgggcgttcatcaaatattaagctcgctccagct 302

                                                                       
Query: 61  gacttccctacagctctgttcaccagcctttgcctgaggtaagttgggaatgctggtgag 120
           | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 301 gccttccctacagctctgttcaccagcctttgcctgaggtaagctgggaatgctggtgag 242

                                                    
Query: 121 caggcttcccattctgaattggatatgccttggatgcagcc 161
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 caggcttcccattctgaattggatatgccttggatgcagcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 161
Length of database: 561
Length adjustment: 8
Effective length of query: 153
Effective length of database: 553
Effective search space:    84609
Effective search space used:    84609
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)