BAC Information

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BAC

Clone NameMSMg01-109M10
Chromosome6 (Build37)
Map Location 77,451,435 - 77,451,671
singlet/doubletsinglet
Overlap geneCtnna2
Upstream geneLOC100042956, Lrrtm1
Downstream geneLOC668169, EG434050, Pap, Reg3d, Reg3a, Reg2, Reg1, Reg3g, LOC621716, Ppia-ps6_789.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-109M10.T7 (MSMg01no109_m10.b1)MSMg01-109M10.TJ (MSMg01no109_m10.g1)
ACCAG322876AG322877
length738781
length of high quality
(start - end)
239 (98 - 336)45 (74 - 118)
definitionCHROMAT_FILE: MSMg01no109_m10.b1 PHD_FILE: MSMg01no109_m10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:07 2005CHROMAT_FILE: MSMg01no109_m10.g1 PHD_FILE: MSMg01no109_m10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCCCTTACTGTCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXNATT
TCGTTACCGAGGCGCGGAANTCATCTAGTGCCACAAACTCTGGAGNCCTG
AAATGCCCTTGGAACTGAAATTCCAGGGAAGACAATAGTTATTGTCACAG
AGAAAGGACACCGTCTTGTTCAGTGAAAGCAGATTCTGTAGCAGTCTCTG
GTATTCCCAAATCTCAAATGACTAAGGTATGTGCACATTTCTACTTATGA
ACAACAATATGAGATGATTCTTTTTTAGAATGTTTTATAATTCCTAAAAC
AGTTTTTACGTCTATTGTATTTATTTTTTATGTATTAGTGGGTTTTCATT
CTTCATGGCGCACACATGGAAGGCAGTTTCTCCCTTCACACCTTTACATG
AGTTCTGGGCGTTCAACTCAAGTAGCCCGACCTGCAACCCCAAGGGCGCT
ACCGTCTGAGTCCTCTCCTCTGACCTGCATGTGTTATCTTAACAAAGGCT
AGGTTCAGATTGTGCTCATCCTTCAGACCCAAATTCTGTATTTCAGGTCG
CTTTAACTGACCTGTGAACTGACCACAATAGGCAGTACTGTTTTACAATA
CCTGATGTAAAGACATCTTATCCTATTGCATTACGGATAAAAACGCCTTT
GAATTACCCCACGCCCCTGTTATATTTTTTAATAGTCACAAAGACCCTGG
AACTTGGAACACATGTTGGAATCCCATCTCCCCTATTA
CAATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTCTCCAATCTCTTGAATGCACAGATA
GATATCCAGAAGTGCAAGGAGACTGGCGTACAAGAAATTATGAGTGATAA
ACTGGACATGGACCTGTGCCGTTGCTTTAGCTGATGCCCAGGTTTCAAAT
GGAGCATTCAGGCTAAGAATAGGACACGAAGCCTGGGGGCCCTGCTGGAT
GTTTCTAACCCAGGCCATTATTAGAAGGAAGTCTGGTATCTCAGGAAGAA
ACATCATTGTAATATGATCTTATTTAAACAACATTTAACTTATAAAACTT
TTGTGTTAGTTTATTATAATGTGTCTTACCTATTATAGAGAATGATATAA
CATATCACTCTCTTGACCACATTAATCTTATTTCATTGTTTCATTTATTC
CTTATTCGACTATTAGAATTATCTACGTTTTGTCTTGTTTCTACTTATAA
TTATATTTTTAAATATCTCCTGCTTTAATTATCTTCTATTCCTCTGATTA
CATCCAATACCTTCTGTCCTTCATAACTCCTTATGTCAACCTTTATCTAA
AACGTTAAATTTTATCTTCTTCTATGCTCCTCAAATATTATTTCTCTTTC
TTACTATCTATCTTCCTACTTATTTTTATGTCATACGTTATTCCTAATTT
CATAATTCAATTCATCCTCATCACAATTTTCATCTTTACTACCAACTATA
AATGTTCTACTTCTTCACATAATATCTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no109_m10.b1 MSMg01no109_m10.b1 CHROMAT_FILE:
MSMg01no109_m10.b1 PHD_FILE: MSMg01no109_m10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:07 2005
         (239 letters)



>mm_chr6_77451235_77451872
          Length = 638

 Score =  397 bits (205), Expect = e-115
 Identities = 230/239 (96%), Gaps = 3/239 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgaaatgcccttggaactgaaattccagggaagacaatagttattgtcacagagaaagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgaaatgcccttggaactgaaattccagggaagacaatagttattgtcacagagaaagg 260

                                                                       
Query: 61  acaccgtcttgttcagtgaaagcagattctgtagcagtctctggtattcccaaatctcaa 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 acaccgtcttgttcagtgaaagcagattctgtaacagtctctggtattcccaaatctcaa 320

                                                                       
Query: 121 atgactaaggtatgtgcacatttctacttatgaacaacaatatgagatgattctttttta 180
           ||||||||| ||||||||||||||||||||||||||| |||||||||||||||  |||||
Sbjct: 321 atgactaagatatgtgcacatttctacttatgaacaataatatgagatgattccatttta 380

                                                                      
Query: 181 gaatgttttataattcctaaaacagtttttacgtctattgtatttatttttt-atgtat 238
           ||||  |||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 381 gaat--tttatagttcctaaaacagtttttacgtctattgtatttatttttttatgtat 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 638
Length adjustment: 9
Effective length of query: 230
Effective length of database: 629
Effective search space:   144670
Effective search space used:   144670
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)