Query= MSMg01no110_e07.b1 MSMg01no110_e07.b1 CHROMAT_FILE:
MSMg01no110_e07.b1 PHD_FILE: MSMg01no110_e07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:48 2005
(660 letters)
>mm_chr6_123770402_123771459
Length = 1058
Score = 1185 bits (613), Expect = 0.0
Identities = 645/657 (98%), Gaps = 4/657 (0%)
Strand = Plus / Plus
Query: 5 gaattcagcacaaagcttacaatgaggcttccctttggagaactggtgtgaagggaacat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagcacaaagcttacaatgaggcttccctttggagaactggtgtgaagggaacat 264
Query: 65 gcttgaagaaggggcacaggtagattcaacaattctaatatttcatttttttttgagcaa 124
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 265 gcttgaagaaggggcacaggtagattcaacaattctaatatttcattttttt--gagcaa 322
Query: 125 tatctatttttttctattctattttttattagat--ttttttcatttacatttcaaatgc 182
||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 323 tatctatttttttctattctattttttattaaatatttttttcatttacatttcaaatgc 382
Query: 183 tagtcccaaagccccctatacctccctccaccctgctccccaacccacctactcctgctt 242
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 383 tattcccaaagccccctatacctccccccaccctgctccccaacccacctactcctgctt 442
Query: 243 cctggccctggcattcccctgtactggggcatattatcttcacaagaccaagggcctcgc 302
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 443 cctggccctggcattcccctgtactggggcatattatcttcacaagaccaagggcctcac 502
Query: 303 ctccaattgatggctgactaggccatcacctgctacatatgcaactagagacacagctct 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ctccaattgatggctgactaggccatcacctgctacatatgcaactagagacacagctct 562
Query: 363 gggggtactggttagttcatattgttgttccacctatagggttgcagacccctttagctc 422
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 563 gggggtactggttagttcatattgttgttccacccatagggttgcagacccctttagctt 622
Query: 423 cttggatactttcttagctccttcattaggggccctgtgtttctggcaaatacagaagtg 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 cttggatactttcttagctccttcattaggggccctgtgtttctggcaaatacagaagtg 682
Query: 483 gatgctcacagtcattctaatatttcttatggaaagtgtcgcagtatgattgtttatatg 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 683 gatgctcacagtcattctaatatttcttatggaaagtgtcgcagtatgattgtttttatg 742
Query: 543 atgaaaatttttctaaagaatttatcagacttaaagacattatcccttcatgtactatta 602
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 atgaaaaattttctaaagaatttatcagacttaaagacattatcccttcatgtactatta 802
Query: 603 atcaaaatcaagtagtgaatttgtgttgttttttagactttgaatagtctccattaa 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 atcaaaatcaagtagtgaatttgtgttgttttttagactttgaatagtctccattaa 859
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1058
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1048
Effective search space: 681200
Effective search space used: 681200
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no110_e07.g1 MSMg01no110_e07.g1 CHROMAT_FILE:
MSMg01no110_e07.g1 PHD_FILE: MSMg01no110_e07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:48 2005
(625 letters)
>mm_chr6_124139051_124140077
Length = 1027
Score = 862 bits (446), Expect = 0.0
Identities = 473/482 (98%), Gaps = 3/482 (0%)
Strand = Plus / Minus
Query: 1 ctattggacttcaagtacagggcacatatgctctgtatttccattgctcctta-cactga 59
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 482 ctattggagttcaagtacagggcacatatgctctgtatttccattgctccttagcactga 423
Query: 60 ataagggacaggggccactgcatccattgtctttttaaatcatcttcatataagtacata 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ataagggacaggggccactgcatccattgtctttttaaatcatcttcatataagtacata 363
Query: 120 ctccatgttgaacaaatctcaccttcccctcccatcagtcctttagtttctcaggccaga 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ctccatgttgaacaaatctcaccttcccctcccatcagtcctttagtttctcaggccaga 303
Query: 180 tttaactcta-attcactgtgtaggccctacaattgcaatttaaaattttcaaaatacaa 238
|||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 302 tttaactctactttcactgtgtaggccctacaattacaatttaaaattttcaaaatacaa 243
Query: 239 gtttacatagaatactaatacctaaattttaatatttcttttatttcaatgttgcttatt 298
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 gtttacatagaatactaacacctaaattttaatatttcttttatttcaatgttgcttatt 183
Query: 299 ctagtagtatgaaggatgtcactgaaatttgtgctgggttacattgaacctgtagattac 358
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 182 ctagtagtatgaaggatgtcactggaatttgtgctgggttacattgaacctgtagattac 123
Query: 359 tttgggtacagtaaatttctttacaatattattccctccaatacatgagtatgggatgtc 418
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 tttgggtacagtaaatttttttacaatattattccctccaatacatgagtatgggatgtc 63
Query: 419 tttccacattctgataccttctttaattaattaa-ttttttttctgtgcttaaaggaagt 477
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 62 tttccacattctgataccttctttaattaattaatttttttttctgtgcttaaaggaagt 3
Query: 478 ct 479
||
Sbjct: 2 ct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1027
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1017
Effective search space: 625455
Effective search space used: 625455
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
