CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTATTGATTATGGTTTTCTGTAATGGTCTATAGTTGTAAGGAGAAA
TTTCCTTGATGAGGAGGGCTCTCTCATGTATTTACGGATTATAGTGAATT
AACAAAGTGACAGAAGTAGGTTCTTCTCTTAAAGAAAGAAGAAAGGAAAG
AAAAAAGAAAGGAGAGAGGGAGGAAGAAAGAAGAAAGGAAAAAAAGGAAG
GAAGGAAGAAAGAAGGCAGGCAGGCAGAAGTAGTATTTGAATCTGAACAT
GAATCATCTATCTACCCAAAGTACTCAGATCCTCGTGAAATTGAGTTGTT
ACTTAAAAAGTCTTAATTTTCTCCTTGGACCCTACATGTTGGCTATTTCA
AGTTATAAGCAGTCTGCCAGCTTTCTAAAGAACAAAGACCCTGTCCTGCA
ACTCTCCATGCCTATTAAGATCTGCTTCTATGTCTCAAGATTTTAGTAGC
CTCCATTAATTTTTAAAGATTATTTTCTATACCAAAATTACAAATAAACC
ATTGACTTTAAAAAAGAAAAACAAAAACAACAACAACAACAACAAAAATC
CTGGAGCACACCTCAGCTCCTAGCTGCTTCTGCACAGCTGTTCCACACTG
TACACTCTTACTTTAATTATCTCATAGCTGGGCTCTTCTCCTTCCCTCTT
CATN

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCCAACTGGGGATCCATCCCATCTA
CAGTCACCAAACCCAGACACTGTTGTGGATGCCAAGAAGTGCTTGCTGAT
AGGAGCCTGATATAGCTGTCTCCTGAGAAGCTCTGCCAGAACCTGACAAA
TATAGAGGCTCATGCTTGCAGCCAACCATTGGACTGAGTGCAGGATCCCC
ATGGAGGAGTTAGAGAAAGGACTGAAGGAGCCGAATGGGTTCACGACCTC
ACAGGAAGAACAACCAACCAGACACCTCAGAATTCCCAGGGACTAAACCA
CCAACCAAAGAGTACACATGGAGGGACCCATGGCTCCAGCTTCATATGTA
GCAGAAGATGGCCTTGTTGGGCATCAATGGGAGGAGAGACCCTTGGTCCT
ATGATGGCTCAATGCCCCAGTGTAGGGAAATGCCAGGGAGGGGAGGCAGG
AGTGGGTGGATGGGTGCGCCNNNNNCCCNCCCCCCCCCCNCCTCCCCCCC
CCCTCTTCCTCTTTCCCTCCTCCTCCTTTCTTTTCTTCTTCCCCCCTTTT
CCTCTCATTCTTTTCTCTCTTCCTTTCTTCCTTTTTCCCCCCTCTTTCCC
CTCTCCCTTCTTCCCCCCCCNCTCTTTTTTTTCTTCCTTCCCTCCCCCCC
CN

Query= MSMg01no110_f22.b1 MSMg01no110_f22.b1 CHROMAT_FILE:
MSMg01no110_f22.b1 PHD_FILE: MSMg01no110_f22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:56 2005
         (660 letters)



>mm_chr6_96036257_96037316
          Length = 1060

 Score = 1160 bits (600), Expect = 0.0
 Identities = 653/698 (93%), Gaps = 44/698 (6%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctattgattatggttttctgtaatggtctatagttgtaaggagaaatttccttg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 gaattcctattgattatggttttctgtaatggtctatagttgtaaggagaaatttccttg 222

                                                                       
Query: 65  atgaggaggg-------------------------------------ctctctcatgtat 87
           ||||||||||                                     |||||||||||||
Sbjct: 223 atgaggagggctagggactctctctctctctctctctctctctctctctctctcatgtat 282

                                                                       
Query: 88  ttacggattatagtgaattaacaaagtgacagaagtaggttcttctcttaaagaaagaag 147
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 ttacggattatagtgaattaacaaagtgacagaagtaggttcttctcttaaagaaagaag 342

                                                                       
Query: 148 aaaggaaagaaaaaagaaaggagagagggaggaagaaagaagaaaggaaaaaaaggaagg 207
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 343 aaaggaaagaaaaaagaaaggagagagggaggaagaaagaagaaagg-aaaaaaggaagg 401

                                                                       
Query: 208 aaggaagaaagaaggcaggcaggcagaagtagtatttgaatctgaacatgaatcatctat 267
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 aaggaagaaagaaggcaggcaggcagaagtagtatttgaatctgaacatgaatcatctat 461

                                                                       
Query: 268 ctacccaaagtactcagatcctcgtgaaattgagttgttacttaaaaagtcttaattttc 327
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ctacccaaagtactcagatcctcgtgaaattgagttgttacttaaaaagtcttaattttc 521

                                                                       
Query: 328 tccttggaccctacatgttggctatttcaagttataagcagtctgccagctttctaaaga 387
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 522 tccttggaccctacatgttggctatttcaagttataagcagtctgtcagctttctaaaga 581

                                                                       
Query: 388 acaaagaccctgtcctgcaactctccatgcctattaagatctgcttctatgtctcaagat 447
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 acaaagaccctgtcctgcaactctccatgcctattaagatctgcttctatgtctcaagat 641

                                                                       
Query: 448 tttagtagcctccattaatttttaaagattattttctataccaaaattacaaataaacca 507
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 tttagtagcctccattaatttttaaagattattttctataccaaaattacaaataaacca 701

                                                                       
Query: 508 ttgactttaaaaaagaaaaacaaaaacaacaacaacaacaacaa------aaatcctgga 561
           ||||||||||||||||||||||||||||||||||||||||||||      ||||||||||
Sbjct: 702 ttgactttaaaaaagaaaaacaaaaacaacaacaacaacaacaacaacaaaaatcctgga 761

                                                                       
Query: 562 gcacacctcagctcctagctgcttctgcacagctgttccacactgtacactcttacttta 621
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 gcacacctcagctcctagctgcttctgcacagctgttccacactgtacactcttacttta 821

                                                 
Query: 622 attatctcatagctgggctcttctccttccctcttcat 659
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 822 attatctcatagctgggctcttctccttccctcttcat 859


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space:   682500
Effective search space used:   682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)