NAAGACAGCACGGTGGTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCGCGGAATTCTCTCCATCTCCCGAGAGAAATGCCTGTCCAC
AGTTCCTGTTCTTGGCTTCAGGACTGAAAGGTTATACATTTATTTTGTGC
TTTATAAATAGTCAAATGTATAATGTTTCACTACTGTTCCAGGAAGAGAC
TAACATAGAAAGAAAATGAAAATCCAATTAATATTTAACTTAATGCTCAT
ATTAAATTAAAAATGAATGCAAATAGATGTTTTAAAAGTAATGCTTTTGT
TTACATTAATTCGTGTTCATTAAATATTCTTTAATTAATATTCATTTGAT
GTGAATTAGTATTGATTCATAAACAAAAATTATATTCAATCAGTTTTAAT
TTAGACAAAAGGCATTGCCCATTGAAGATCAGTATATGAATGCAAAATAT
ATAGAAGACTAAATGTCAAAGAAGTGAAATGGTTTAGAGAGAAAAAGATA
AAATGTATATCTGGAGAAGAAATATGCATAACTTTCCACTGCTAATGCAG
TGTATTTTCCACAATAGTTTACACAAAGCTTTATGCATCAAAATATACTG
AAACACTTGGGATATTCAATAACAGGAAACAGAATCAAATATTGTGATAC
ATATTGAGGCTGCTACCATGCTTGCATAGATTCATGTACTAGCTGACAGG
GTGCAGGAAAATGGGATAACAGG

NNNNNTTTCAATACANNGNNNANCCTGNCNNCCCCCTGTTTCCCAAATTT
ANNTGACCTATANAANNATCCCCGAAATTCCTTAATTTANTGNGTTCTCT
TGAATTTNATCCTAACTCANTGNTNNCTATAANAATATTTACTGTTTAAT
ATTTANAATTAATTCTCCATTANNATCCCCTANNCNTTTCTATTTTCATT
CTANNTNATNTNNNANANNNNNNNANNTNANNAACNNNNANAANNATTTT
GACTACCCCCCTTCCTTTTTTNANAACTCCCCCTTCCCCCACCTTCAANN
NTTTTAATTTNNNAACCCCCCCCCNNCNCCCCCCCCCCAAACCCCCCCCC
GCCCCCCNNNNAAAAAANNCCCTTTTTNACCCCCAATTTTTTTTTAGAGA
AAAAGAATAAAAAAAGAGAGAAAAAAAAAGAAAAAAAAAAAAAAGAGAAT
AGCTTTATTGCTGGACGTAAANNNNNNNNNNNNNNNNNNNNNTCNCCCNN
CCCNNNCCNNNNNNNTNTGCCCTTGTTTTTCTGAAAGAAGATAAGAGAGA
GAGAAAGCTTTNNNNNNNNNCCCNCCNNNNNNNNNNNNNNAACCNNNNNN
NNNNNNNNNNNNNNNNAAAAATAAAAAATAATTTAAAAACAAAAAAAAAN
NNNNNNNNNNNNCCNNTNTTGGTGTGTTTGTTNNNNNCCTTTTNNNNNNN
NNCNNCNNNNNCCCCNCTTTTCNNNCCCCNCCCCCNCCCCCTTGTTTGGG
GGGGGGGGATGGGGGCGCCTGGGGCCCCCCNTTTCCTTTTTNCTTCCCCC
CCTCCTTTCCTTTTCTCCCCCTTTTTTTTTAAATAG

Query= MSMg01no110_m08.b1 MSMg01no110_m08.b1 CHROMAT_FILE:
MSMg01no110_m08.b1 PHD_FILE: MSMg01no110_m08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:27 2005
         (664 letters)



>mm_chr6_110465448_110466511
          Length = 1064

 Score = 1214 bits (628), Expect = 0.0
 Identities = 649/656 (98%)
 Strand = Plus / Plus

                                                                       
Query: 9   tctctccatctcccgagagaaatgcctgtccacagttcctgttcttggcttcaggactga 68
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 tctctccatctcccgagagaaatgcctgtccacagttcctgttcttggcttcaggactga 268

                                                                       
Query: 69  aaggttatacatttattttgtgctttataaatagtcaaatgtataatgtttcactactgt 128
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 269 aaggttatacatttattttgtgctttataaatagtcaaatgtataatgtttcattactgt 328

                                                                       
Query: 129 tccaggaagagactaacatagaaagaaaatgaaaatccaattaatatttaacttaatgct 188
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tccaggaagagactaatatagaaagaaaatgaaaatccaattaatatttaacttaatgct 388

                                                                       
Query: 189 catattaaattaaaaatgaatgcaaatagatgttttaaaagtaatgcttttgtttacatt 248
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 389 catattaaattaaaaatgaatgcaaatagatgttttaaaagtaatgctttggtttacatt 448

                                                                       
Query: 249 aattcgtgttcattaaatattctttaattaatattcatttgatgtgaattagtattgatt 308
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 449 aattcgtgttcattaaatattctttaatttatattcatttgatgtgaattagtattgatt 508

                                                                       
Query: 309 cataaacaaaaattatattcaatcagttttaatttagacaaaaggcattgcccattgaag 368
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 cataaacaaaaattatattcaatcagttttaatttagacaaaaggcattgcccattgaag 568

                                                                       
Query: 369 atcagtatatgaatgcaaaatatatagaagactaaatgtcaaagaagtgaaatggtttag 428
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 atcagtatatgaatgcaaaatatatagaagactaaatgtcaaagaagtgaaatggtttag 628

                                                                       
Query: 429 agagaaaaagataaaatgtatatctggagaagaaatatgcataactttccactgctaatg 488
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 agagaaaaagataaaatgtatatctggagaagaaatatgcataactttccactgctaatg 688

                                                                       
Query: 489 cagtgtattttccacaatagtttacacaaagctttatgcatcaaaatatactgaaacact 548
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 689 cagtgtattttccacaatagtttacacaaagctttatgtatcaaaatatactgaaacact 748

                                                                       
Query: 549 tgggatattcaataacaggaaacagaatcaaatattgtgatacatattgaggctgctacc 608
           |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 749 tgggatgttcaataacaggaaacagaatcaaatattgttatacatattgaggctgctacc 808

                                                                   
Query: 609 atgcttgcatagattcatgtactagctgacagggtgcaggaaaatgggataacagg 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 atgcttgcatagattcatgtactagctgacagggtgcaggaaaatgggataacagg 864


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space:   689316
Effective search space used:   689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)