BAC Information

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BAC

Clone NameMSMg01-111C23
Chromosome6 (Build37)
Map Location 32,213,695 - 32,214,334
singlet/doubletsinglet
Overlap genePlxna4
Upstream geneMkln1, Podxl, EG619959, LOC620104, 1700012A03Rik
Downstream geneChchd3, LOC100039118, Gm1401, Exoc4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-111C23.T7 (MSMg01no111_c23.b1)MSMg01-111C23.TJ (MSMg01no111_c23.g1)
ACCAG323921AG323922
length1,1121,121
length of high quality
(start - end)
697 (79 - 775)640 (123 - 762)
definitionCHROMAT_FILE: MSMg01no111_c23.b1 PHD_FILE: MSMg01no111_c23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:15:10 2005CHROMAT_FILE: MSMg01no111_c23.g1 PHD_FILE: MSMg01no111_c23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:15:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNGGATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTGTTTAGCTCTGCCCTTTAAGTTTTAATGGGGTTATTTGATTTTC
TGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCTA
TCTGATTTAGGATAGGTAAAGATTCTTTCCCAATCTATTGGGGGCTTTTT
GTCTTATTGACGGTGTCTTTTGCCTTACAGAAGCTTTGCAATTTTATGAG
GTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTAT
TCAGGAATTTTTCCCCTGTGCCCATATCTTCGAGGCTTTTCCCTAATTTC
TCCTCTATAAGTTTCACTGTCTCTGGTTTTATGTGGAGTTTTTTAATCCA
CTTAGATTTGACCTTAGTACAAGGAGATAGAAATGGATCAATTCGCATTT
TTCTACATGATAACTGCCAGTTGTGCCAGCACCATTTGTCGAAAATGCTG
TCTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTTAAAGATCAAGTGACT
ATAGGTGTGTGGGTGCATTTTTGGGTCTTCAATTCTTTTCCATTGGTCTA
CTTGTCTGTCACTATACCAGTACGATGCAGTTTTTATCACAATTGCTCTG
TAGTACAGCTTTAGGTCAGGCATGGTGATTCCACCAGAGGTTCTTTTATC
ATTGAGAAGAGTTTTTGCTATCCTAGGTTTTTGTTATTCCAGATGAATTT
GCAGATTGCCCTTTCTAATTCGTTGAAGAATTGAGTTGGAATTTTGATGG
GGATTGCATTGAATCTGTAGATTGCTTTTGGCAAGGTAGTCATTTTTACT
ATATTGATCCTGCCAATCCATGAGCATGGAAGATCTTTTTCCATCTTCTG
AGATCTTCTTTAATTTCTTTCTTCAAAGACTTAAAGTTTTTTATCATAAC
AGATTCTTTCACTTCCCTTAGTTTAGAGGTCACGCCCAAGGAAATTTTAA
TATTATTTGGTGGACTAATTGAAGAAAGGGTGGTTTGTTTTCCCTTAATT
TTTTTTTTCCCCAACTTGGGTTTAATTCCCTTTTGGGGTTACCGCGAAAT
AGGTCCCTTTTT
CGCCCCAATTTTATCTCATGGNXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCCTTTAAAGCATATGCCAGATGGGC
CATCCTCCTACTTTGCTCTTGTCATAAGAACCAGGGCAGAACTGGGCATA
CCATTATGCAGACAGACCCAGTCCCCAGGAAAGGGATGAAGTTGGGAGAG
ATCCTGGAGCAAGGCACCTGGGGCTTTTTCCACTGTTCAGCTAGTGGGTT
ATAAGGGATGGTTCTACTAGGAAGGACAACAGAGAGCCATTTTGAAGTGA
GAACACATGCCTCAGGTCTCACAGCAAACTAGGGAAGAATGTAAGATGTG
CATGCAGGTCCTAGGTCCCCACCCACCCTCCAGTGCTGTTCTAGCACCCC
ATGACTGACTGTCTAGTGAGAAAATGAACCTCCAGACACACCATCGTTGA
TTCTAAGCCTGTAGGGACCACAGCCCGAGGAGTCCTAGTCCTTGCCTAGG
ATCTTCTGTGGGGACCTGACTTGGTGGTATCATTGTCAAATGGTGATTCT
CCATCCAATGAGTTGGTTAAATTTTCAAAGGGAAAACATTTTGACAGACA
GCGATAGCAGTCCATTGTGCTGGTCACAAGATGGACCAAGAGGAGACACT
AATAAGCCATGGATCCTCTCCATAGCCCTAGAGCAGCGGTTCTCAGCCAA
AACCGTATATTTATTTTCACTGATACTTCATAACTGTCATTTTTCTACTC
TTTTGAATCATACTGTAAATATTTGTTTTGTGATGGCCATAGTGACCCCC
GCAGATTGAGAATTGCTGTTCTGGATGGTTTGAAATCCTATGAATGCTAA
AAACAGAGCACAACTAAACCTTGGATCCTAAAATACCCTTTGTGGGGCTA
ACACTTTTTTTAAAGACAGGGTTTCACTGGGTATCCTTGACTGACCCGGG
ACTCACTCTGTAAAACAGGCCTGACCTGGACTTCGAAGATCTGGCCGGCA
TCTGGCCTCCTTGAGTGGCGGGAAATTAAGGGGTGGTGGCATGCCCCCCT
ACCCGTGACCCATTACTTACCTTAAAATTCTTCCCAATGGGTTACCCCTC
CCTGGCTTAAACAAAACTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no111_c23.g1 MSMg01no111_c23.g1 CHROMAT_FILE:
MSMg01no111_c23.g1 PHD_FILE: MSMg01no111_c23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:15:10 2005
         (640 letters)



>mm_chr6_32213557_32214596
          Length = 1040

 Score = 1191 bits (616), Expect = 0.0
 Identities = 634/640 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cataagaaccagggcagaactgggcataccattatgcagacagacccagtccccaggaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 cataagaaccagggcagaactgggcataccattatgcagacagacccagtccccaggaaa 719

                                                                       
Query: 61  gggatgaagttgggagagatcctggagcaaggcacctggggctttttccactgttcagct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 gggatgaagttgggagagatcctggagcaaggcacctggggctttttccactgttcagct 659

                                                                       
Query: 121 agtgggttataagggatggttctactaggaaggacaacagagagccattttgaagtgaga 180
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 actgggttataagggatggttctactaggaaggacaacagagagccattttgaagtgaga 599

                                                                       
Query: 181 acacatgcctcaggtctcacagcaaactagggaagaatgtaagatgtgcatgcaggtcct 240
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 acacatgcctcgggtctcacagcaaactagggaagaatgtaagatgtgcatgcaggtcct 539

                                                                       
Query: 241 aggtccccacccaccctccagtgctgttctagcaccccatgactgactgtctagtgagaa 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 538 aggtccccacccaccctccagtgctgttctagcaccccatgactgactgtctagtgagga 479

                                                                       
Query: 301 aatgaacctccagacacaccatcgttgattctaagcctgtagggaccacagcccgaggag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 aatgaacctccagacacaccatcgttgattctaagcctgtagggaccacagcccgaggag 419

                                                                       
Query: 361 tcctagtccttgcctaggatcttctgtggggacctgacttggtggtatcattgtcaaatg 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 418 tcctagtccttgcctaggatcttctgtggggacctgacttggtggtatcattgtcaaacg 359

                                                                       
Query: 421 gtgattctccatccaatgagttggttaaattttcaaagggaaaacattttgacagacagc 480
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 358 gtgattctccatccaatgagttggttaaattttcaatgggaaaacattttgacagacagc 299

                                                                       
Query: 481 gatagcagtccattgtgctggtcacaagatggaccaagaggagacactaataagccatgg 540
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 gatagtagtccattgtgctggtcacaagatggaccaagaggagacactaataagccatgg 239

                                                                       
Query: 541 atcctctccatagccctagagcagcggttctcagccaaaaccgtatatttattttcactg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 atcctctccatagccctagagcagcggttctcagccaaaaccgtatatttattttcactg 179

                                                   
Query: 601 atacttcataactgtcatttttctactcttttgaatcata 640
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 atacttcataactgtcatttttctactcttttgaatcata 139


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space:   648900
Effective search space used:   648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)