BAC Information

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BAC

Clone NameMSMg01-111G12
Chromosome6 (Build37)
Map Location 103,732,575 - 103,733,331
singlet/doubletsinglet
Overlap genenone
Upstream geneChl1, LOC666141
Downstream geneLOC100043345, Cntn6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-111G12.T7 (MSMg01no111_g12.b1)MSMg01-111G12.TJ (MSMg01no111_g12.g1)
ACCAG324083AG324084
length1,1881,197
length of high quality
(start - end)		761 (42 - 802)690 (71 - 760)
definitionCHROMAT_FILE: MSMg01no111_g12.b1 PHD_FILE: MSMg01no111_g12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:15:41 2005CHROMAT_FILE: MSMg01no111_g12.g1 PHD_FILE: MSMg01no111_g12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:15:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTACTATGGGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCCATTATTTCTCTTACTCTTTAGGATCTCCTCCTGGGTTTCTTTTGGC
CCCATCTATATTGTAAGTATTGAACTCTTGAGACTAATATTTCAATGGCT
TGGTGTTACATTCTAGACCATCTATCCTCTGTAAATATATCCCCATATCC
AAGAACTTGGACCTGCCTGGCTTCAGACTTGATATTGAAATGCCAGTATT
AGTAGCTAGCCTTAGCTTCCATATAAGCTATTTATCTTATTTAAAGAATA
GTGTGATTTGATTAATTTTTATCATCTAAGGAGTCATTTTCAAGCAATAT
AATTCGATTTGTGGAATATGGCTTTCCACTTCACTGCACTAACATATTCA
TGAGTTTAATTCCACAAATCATATGTAAATAGTAATAAAAGAATGGATAA
AATCCATCCAGGTTTAGAGGTGAGGCTTGGCAAAAGTGATTAGTCTTTGT
GTTTTACAGGGGAGTAACATGACTAAATCTTAATGGTATTTATGTAAAGA
AGAACCAACATCTAGGCAGAGAGACATATGCATCCCTAGTCTCCAGTCAT
GCAATGTCCTGTGTCATTTCAAGGTGCTGACAACACGAAGACCATCATCA
AATGGGGGTGTTGCTGATACGATGTGCCATTAAGCCTCCAAAATGTGATC
TCAACAAGTGAACTTTTGAAGTTAGCTTGAAGTTGGTTTCTTATTGTAGT
AAGAGAACCAATAGAACTGAATGTTCACTTCCTTTAACTCCGTTGTTGAT
GGTTTGGAGATTCTTGCATAGCCAGGTTTCATTGATTTCTTTTTGGCCAT
TTTTCCCGTATCATTAAAGCTATCTTATATATAAAGTTTAAAAGTGCCAT
CTCATTGTTTGACGCCTACGTATAGAATGATTGATTAGCGTAAGTATTAG
CAACAACAGCCATAACCAACTATAGAATCAACCACCCAAAATCTCCACTT
TTTAAAAATTTAAATTTCCTAAATGAGTATCCGAATTATGAAATTTCTAA
CTTCTTCTTCCTTTCCGGGTCCACTTCTCCCCCCCCCCCTAAGCCCATTG
GCTCTTTAAATTTATGTGGCCCTTTCTTTTTAAAATATTCTAAATTTCCC
GTGTTGGGTGCATGTANGTATCTGTTGTTATTTATTCC

TTTTTTTTAACATTGGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCCTTTTCACCTGAGGAATACCGAATGGCAG
AGAAGCACCTGACAAAATGCTCAACATCCTTAATCATCAGGGAAATGCAA
ATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGAT
CAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAA
CACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAA
TCAGTCTGGCGGTTCCTCAGAAAACTGGATATAGTACTACCGGAGGATCC
AGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGA
AGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGA
AGCTGGAAGGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAAT
GTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAAT
TTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGT
GAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAG
TGGATATTAGCCCAAAACCTAAGATACCCAAGATATAAGATACAATTTCC
TAAACACATGAAACTCAAGAAAAATGAAGACTGAAGTGTGAACACTATGC
CCCTCCTTAGAAGTGGGAACAAAACACCCTTGGAAGGAGTTACAGAGACA
AAGTTTGGAGCTGAGATAAAAGGATGGACCATGTAGACACTACCATATCC
GGGGATCCATCCCATAATTCGNCTCCAAATGCTGACACCATTGCATACAC
TAGCAAGATTATGCTGAAAGGACCCTGATATAGTTGTCTCTTGTCAAAAT
ATGCCTGGGCCTACCAAACATAGAAGTGGATGCTCCCAGTCGGTTTATTG
GATGGATCAATGGGCCCCCCATAAAGGGAGCTTAAGAAAAATACCCAAAA
AAGCTAAAGGGGATTCTGCACCCCTATAGGGGGGACCACCTTTATGAATC
TATCCCGTACCCCCGGAACTTTTTGACCCCTACCTGGATAAGGACTCCAA
AAAAGGGTCCTATTCGGCCCTTCCCCTGGTAAAAGAGAGCTCTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no111_g12.b1 MSMg01no111_g12.b1 CHROMAT_FILE:
MSMg01no111_g12.b1 PHD_FILE: MSMg01no111_g12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:15:41 2005
         (761 letters)



>mm_chr6_103732371_103733531
          Length = 1161

 Score = 1394 bits (721), Expect = 0.0
 Identities = 748/757 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctccattatttctcttactctttaggatctcctcctgggtttcttttggccccat 64
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 205 gaattctccattatttctcttactctttaggatctcctcctggatttcttttggccccat 264

                                                                       
Query: 65  ctatattgtaagtattgaactcttgagactaatatttcaatggcttggtgttacattcta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctatattgtaagtattgaactcttgagactaatatttcaatggcttggtgttacattcta 324

                                                                       
Query: 125 gaccatctatcctctgtaaatatatccccatatccaagaacttggacctgcctggcttca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaccatctatcctctgtaaatatatccccatatccaagaacttggacctgcctggcttca 384

                                                                       
Query: 185 gacttgatattgaaatgccagtattagtagctagccttagcttccatataagctatttat 244
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 385 gacttgatattgaaatgccagtattagtagctagccttagcttccatatacgctatttat 444

                                                                       
Query: 245 cttatttaaagaatagtgtgatttgattaatttttatcatctaaggagtcattttcaagc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cttatttaaagaatagtgtgatttgattaatttttatcatctaaggagtcattttcaagc 504

                                                                       
Query: 305 aatataattcgatttgtggaatatggctttccacttcactgcactaacatattcatgagt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aatataattcgatttgtggaatatggctttccacttcactgcactaacatattcatgagt 564

                                                                       
Query: 365 ttaattccacaaatcatatgtaaatagtaataaaagaatggataaaatccatccaggttt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttaattccacaaatcatatgtaaatagtaataaaagaatggataaaatccatccaggttt 624

                                                                       
Query: 425 agaggtgaggcttggcaaaagtgattagtctttgtgttttacaggggagtaacatgacta 484
           ||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||
Sbjct: 625 agaggtgaggcttggcaaaagtgattagtttttgtgttttacaggggagtaccacgacta 684

                                                                       
Query: 485 aatcttaatggtatttatgtaaagaagaaccaacatctaggcagagagacatatgcatcc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aatcttaatggtatttatgtaaagaagaaccaacatctaggcagagagacatatgcatcc 744

                                                                       
Query: 545 ctagtctccagtcatgcaatgtcctgtgtcatttcaaggtgctgacaacacgaagaccat 604
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 745 ctagtctccagtcatgcaatgtcctgtgtcatttcaaggtgctgccaacacgaagaccat 804

                                                                       
Query: 605 catcaaatgggggtgttgctgatacgatgtgccattaagcctccaaaatgtgatctcaac 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 805 catcaaatgggggtgttgctgatacgatgtgccattaagcctccaaaatgtaatctcaac 864

                                                                       
Query: 665 aagtgaacttttgaagttagcttgaagttggtttcttattgtagtaagagaaccaataga 724
           |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct: 865 aagtgaacttttgaagttagcttgaagttggtttcttattgtggtaagagaaccaataaa 924

                                                
Query: 725 actgaatgttcacttcctttaactccgttgttgatgg 761
           |||||||||||||||||||||||||||||||||||||
Sbjct: 925 actgaatgttcacttcctttaactccgttgttgatgg 961


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 761
Length of database: 1161
Length adjustment: 10
Effective length of query: 751
Effective length of database: 1151
Effective search space:   864401
Effective search space used:   864401
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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