BAC Information

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BAC

Clone NameMSMg01-111J06
Chromosome6 (Build37)
Map Location 12,479,338 - 12,480,065
singlet/doubletsinglet
Overlap geneThsd7a
Upstream geneNdufa4, Phf14, LOC100040844, EG625347, LOC435879
Downstream geneLOC667735, LOC384350, Tmem106b, Gm467, Gm725, 1700016P04Rik, LOC100040478
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-111J06.T7 (MSMg01no111_j06.b1)MSMg01-111J06.TJ (MSMg01no111_j06.g1)
ACCAG324212AG324213
length1,1601,312
length of high quality
(start - end)		724 (75 - 798)---
definitionCHROMAT_FILE: MSMg01no111_j06.b1 PHD_FILE: MSMg01no111_j06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:16:05 2005CHROMAT_FILE: MSMg01no111_j06.g1 PHD_FILE: MSMg01no111_j06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:16:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATCTATGGGCCTATAGACTCACTAAGGGAGAGGATCCGCGGAATTCAT
TAATATTAATTATCTCTATCATCACTGATTTAATGTTCTACTTGAGAGTA
AACCTTATTATTTGCCTACAACATTATGATGCACTTGTACTCATGTATTT
GTCTTATAAATGTATTGGTTTAATAATACTTAATATAATTTATCTGGCAT
TATACTTTGAGAAGTAAACTAATATACATAAGCATAGGAAGGTGTTGATG
ATAGGTCATTCAAGGATATATTACTATGACTGGCCATAAGGTTTAACAAA
GATATATATGTGCATACTTTGTCCAAGTTTATGGAATTATTTCTATGGAC
TGTGTGGCCATGGAAGTACCCACATCTTTGTGTTCTTTGAGAGGCCTTCA
GGAAATACCCTCAACTTCATGCTGTTATTTCTCAAATTGCCAAAGGGAAA
GGTACCAAATGATTCCCTTTTGACAGCTCTCTCAATGATTCCATATTGCC
TTCCTATACCACAGTCTGGTCTCCGTGAAGGACCTTTGGGAAAGATGTGC
ACTTCAGGCTTTGCAGAAGATGGCAACATTCTGCCAGCATCAAAATATTA
GTGGGGATGGTCTGACTCACCCAGCTTCCTAGATCTCAGCTGGAAGATAG
GGCCTCAAGGAAAGGTCCCTCCCTAGGAGCCTATGGTGGAAACATCAGCT
TTCCTCACAAAAGTACTTCCCAAATCAATTTCTAGTGTTTCCTGTTGCCT
TCATATTATTCCAATAAACATGTGAAACACTATTTTATCAAAGGTCCAAA
TGTCTCTACTTATGATGTATATATGTATTTCCTAGAGATGTGTACAAATC
TATCTTTAAAAAAAACTTAAACAAGATATTTGAGTATATACATGTCAGTC
ATCATTGGGAACAGTAACAGAAATTACTATAATTTGACCATATTTTCAAC
TTTTCTGATGAGGTAAAAATGTAACCCATAAACCTTGTGCATGGACATTT
GGGCTCTAACATTCAAACTGCTATTCCCAATTCCAGCAGCCCCCCTTTTT
AAAAAAAACCCCCAATTTCCCCCCCAGGGGAAAGCCCCTAAATTTAAAAC
TTCCCTTTTTGTAACACCCTATAATTTTGTCCTATATAAACCCTTTATTT
CCCCTTAGAA

NTTCCCTTCGTGCCTCNCGCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCCCCTTCCTGTTCGCGACTATTAATGTGAATGAAGAACAGGC
CCCTTTGAGATCCCCCAAGAGCCCCTGGAGGAGAGGGAAGCCCCTCTTTC
TTCTTCCCCTCCTCTTTCCCCTTCTCCTCCCCCCTCTCTCCCCCTTCCCC
TTTTTTTCCCTCTCCTTCTCCCCCTCTCTCTCCCCCCTTCCTTTTCCTTC
TCCCCTTCCCCTCTCCTCCCTCTTTCCTCTTTCCTTTTCCCTTCCCCCCT
CCTTTCCTCCTTCTCCTCTTCCCTCTCCCTCTTTTTTTCTCTCTCCCTCC
CCTTCTCCTCCCCCTCTCTCTCTCCCCCTCCTCTCTCTCCTCTCCCCCTC
CTCCTCCCCCCTTTTTTTTTTTTCCCTCCCTCCCCCCCCCTCTTTTTCTT
TTCTTTCTTTCTCTTCCCCCTCTTTTTTTTCCCCCCCCCCCCCCTTNTCC
TTTTCTCCCCCCCCCTCCTCTCTTTCCTTCTTTTTTTCTTCTCCCTCCCT
CCCTTTCTTCCCCCTCTCTTCTTCCTTCCCCTCTCTCCCTCCTTTCTTTT
CCCTTTCTTCCCTTTCTTCCCTCCCCCTTCTTTCTCCCCTCTCCTTCTCC
TTCCCTTCTCTCCCTCCTTCTCTTTCCCCCTCCCTCTCTCCCTTCTCCCC
TCTCTTTCCTCCCCTTTCCTCTTCTCTTCCTTCTCTTTTCCTCTTTTTTT
CCCTTTTCCCCCCCTTTTCCTTCTTCTTCTCCCCCTCTCCTTTCTTCTCT
TCCTCTCTTCCCCCTCTCTCCCTCCTCCTCTCCTCTTCTCTTCTCTCTCC
TCCCTTCTTTTTTTTCTCTCTCCCTTCCTCTCTCTCCTTCCCCTCTCTTT
CTCTTTTCCCCTCCCCTCTCTTCCTTCTCCCTCCTCCCCCTCTTCCCTCC
CCCCCTCCTCCCCCTTTTCCCTCCCCTCTTTCTCTCCCTCTTCCCCTCTC
TTCCCCTCTTCTTCCTCTCTTCTCCTCCTTCTCCCCCTTTCCCCCCCTCT
TCTCTTCTTCCTCTCTCTCCCTTTCCCCTTCCTTCTTCTCCTCTTTCCTC
TCCTCTTCTCTTCCCCCCCCTCTTCCTCTCCTCCTTTTCCCTCTTCTTTT
TTCCTTCTTTTTCTCTTCCCCTCTTTTCTTTTTCCCTCTCCTCCTCTTCC
TCTTTTCTCCCTTCTTCTCTCCCCTTTCCTCCTTTCTCCCTCTCTTCCTC
CCCTCCTCTCCTCCTCTCTTCTCCCTCTCCTTTCCTTCCTCTTCCTTTCT
CTTTTCTCCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no111_j06.b1 MSMg01no111_j06.b1 CHROMAT_FILE:
MSMg01no111_j06.b1 PHD_FILE: MSMg01no111_j06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:05 2005
         (724 letters)



>mm_chr6_12479145_12480265
          Length = 1121

 Score = 1309 bits (677), Expect = 0.0
 Identities = 714/731 (97%), Gaps = 10/731 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgatttaatgttctacttgagagtaaaccttattatttgcctacaacattatgatgcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 ctgatttaatgttctacttgagagtaaaccttattatttgcctacaacattatgatgcac 253

                                                                       
Query: 61  ttgtactcatgtatttgtcttataaatgtattggtttaataatacttaatataatttatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 ttgtactcatgtatttgtcttataaatgtattggtttaataatacttaatataatttatc 313

                                                                       
Query: 121 tggcattatactttgagaagtaaactaatatacataagcataggaaggtgttgatgatag 180
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 314 tggcattatactttgagaagtaaactaatatacataagcataggagggtgttgatgatag 373

                                                                       
Query: 181 gtcattcaaggatatattactatgactggccataaggtttaacaaagatatatatgtgca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 gtcattcaaggatatattactatgactggccataaggtttaacaaagatatatatgtgca 433

                                                                       
Query: 241 tactttgtccaagtttatggaattatttctatggactgtgtggccatggaagtacccaca 300
           |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct: 434 tactttgtccaagtttatggaattatttctgtggactgtgtagccatggaagtacccaca 493

                                                                       
Query: 301 tctttgtgttctttgaga-------ggccttcaggaaataccctcaacttcatgctgtta 353
           ||||||||||| ||||||       |||||||||||||||||||||||||||||||||||
Sbjct: 494 tctttgtgttccttgagaacgttgaggccttcaggaaataccctcaacttcatgctgtta 553

                                                                       
Query: 354 tttctcaaattgccaaagggaaaggtaccaaatgattcccttttgacagctctctcaatg 413
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 tttctcaaattgccaaagggaaaggtaccaaatgattcccttttgacagctctctcaatg 613

                                                                       
Query: 414 attccatattgccttcctataccacagtctggtctccgtgaaggacctttgggaaagatg 473
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 attccatattgccttcctataccacagtctggtctccgtgaaggacctttgggaaagatg 673

                                                                       
Query: 474 tgcacttcaggctttgcagaagatggcaacattctgccagcatcaaaatattagtgggga 533
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 tgcacttcaggctttgcagaagatggcaacattctgccagcatcaaaatattagtgggga 733

                                                                       
Query: 534 tggtctgactcacccagcttcctagatctcagctggaagatagggcctcaaggaaaggtc 593
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 tggtctgacttacccagcttcctagatctcagctggaagatagggcctcaaggaaaggtc 793

                                                                       
Query: 594 cctccctaggagcctatggtggaaacatcagctttcctcacaaaagtacttcccaaatca 653
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 794 cctccctaggagcctatggtggaaacatcagctttcctcacaaaactacttcccaaatca 853

                                                                       
Query: 654 atttctagtgtttcctgttgccttcatattattccaataaacatgtgaaacactatttta 713
           |||||   |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 854 atttcc--tgtttcctgttgccttcatattattccaataaacatgtgaaacactattt-a 910

                      
Query: 714 tcaaaggtcca 724
           |||||||||||
Sbjct: 911 tcaaaggtcca 921


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 724
Length of database: 1121
Length adjustment: 10
Effective length of query: 714
Effective length of database: 1111
Effective search space:   793254
Effective search space used:   793254
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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