BAC Information

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BAC

Clone NameMSMg01-112C22
Chromosome6 (Build37)
Map Location 41,592,441 - 41,746,781
singlet/doubletdoublet
Overlap geneTrpv5, 1700034O15Rik, Kel, Olfr459
Upstream geneMgam, EG638904, Moxd2, LOC621968, BC048599, 1700074P13Rik, LOC194360, 1810009J06Rik, LOC100040208, 2210010C04Rik, LOC100039790, Tcrb-V8.2, LOC100040359, LOC100040333, Try4, 1810049H19Rik, Try10, Prss3, EG436523, EG386551, LOC100040233, Prss1, Prss2, Tcrb-V13, Ephb6, Trpv6
Downstream genePip, Sval2, Sval1, Sval3, Sva, Tas2r139, Tas2r144, Gstk1, Tmem139, Casp2, Clcn1, 6330503C03Rik, Zyx, Epha1, Tas2r143, Tas2r135, Tas2r126, Olfr458, Olfr457, Olfr456, LOC232745, EG546896, Eapa2, BC011487, 3321401G04Rik, LOC100039918, GA_x5J8B7W6337-801345-802245, Olfr453, Olfr38, Olfr452
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-112C22.T7 (MSMg01no112_c22.b1)MSMg01-112C22.TJ (MSMg01no112_c22.g1)
ACCAG324660AG324661
length750780
length of high quality
(start - end)
393 (46 - 438)346 (74 - 419)
definitionCHROMAT_FILE: MSMg01no112_c22.b1 PHD_FILE: MSMg01no112_c22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:15 2005CHROMAT_FILE: MSMg01no112_c22.g1 PHD_FILE: MSMg01no112_c22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,592,441 - 41,592,807)(41,746,436 - 41,746,781)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGA
ATTCCATAAAGCATTTCCGGAGGGGGTGGGGGGACAAGGTGTGTAGCTCC
TCTAGTCAAACAAGAGTAAGCAAACTTACTATTACACAGCGTCTGAATTC
TAGGTTCACATCTACCATCGGTTTCTATTCTTCATGAATTATCTGTTTAT
GTAGCCAAAGATTTGGAGATGTGGATGAGGTACTAGGAGTCTATAAGAAA
TAGTATTGTTTAGGGCTCAGGCAATGGTCCTGATTTTCTTTGTGTCTGCT
CAACCCCCACCCCCACCCCCACTTTGGAAAAGGTGTATTTGCTTCTAGTC
ACAACCTTTCAAAAGCACATTTTATCACTGATCTTTCCCCCGATTTGCTC
CCACCTGCTCTTATTCTTTTTCTCTCTCCACCCCAAGAAACTCATTGAAA
GGGCAGCCGGTGAGGTGATAAGAACTCTTTTAAATTCTATTTATTCAACA
TAAGTACTCTCCGAAACACCCCATCACCTTCGTCATAAAACTAAGCAAAA
TGCCAGACTTGTTAAAGAGTGCCGATGATCGCTTAATGTGCGTAAAGATG
AGGAAAACTGTGCGCAGAATTTGCTTCTTCTTCTCAATGCCACTAGTCTA
AGTGTAGGCATGGGGAACAAACATCATATAGTATGAAGAAACGTTCCAGG
GGTCTGGAGGCATATGTGAGGTTAGGGGAAGATTCTGAACCCCTGTAATC

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGGGCATGGAGGAGGGTGTGGGTAGG
TGGATGAGTGGGGGAACACCCTCATAGAAGCAGAGGGAGAGGAGAAAGTG
GCTTTCTGGGGATAAACTGGGAAAGGAGATAACATTTGAAATGTAAATAA
AGAAAATATCCAATAAAAAATTCTGCTTTGGGAAGAAAAAGCTATAGTGA
TAGTATAATAGTTATTTGAATAATTAAAATATGGTCAATTTAGATATTAT
TACGTATTATTAGCATAGATTCAAACTATATCTTAATCACCTATCAATCA
CTGCGGTTTCTGAATTTTGGAAAATATGAAATTATCACTCTGTAATGCTG
GTCATGGAGAAGTCTAAGTACTCTTAAGGAAGTTCAGTTCAAATTAGTTC
TAAAACAATTAACGCATCTATGACAAACTATGTCATATGAATTCAAGCCA
AGCCTTAACCCTTCTCTCTCTGCGCGTGTGTGTGCGTGCGTGCGTGTGCC
GCACGCGCGCTTGTCGCGTCCGTTCACTATTCTCCGTCTCTTTCTTTACT
ATCTGTCACATTTTTTATTTTTCTCACCTATTTCCCTCACCCTCATTATT
TACTTCTATCCCATCTTCTTTTTGGCCCAGCCCACCCCTTCTTTCCCCCG
CATTATTACGCTTATTCTTTCCTCTCCGCCCCCTTTTTCCATCCCTTTCT
CTCTTCTCCCCTTTCCTATTACCCCATCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no112_c22.b1 MSMg01no112_c22.b1 CHROMAT_FILE:
MSMg01no112_c22.b1 PHD_FILE: MSMg01no112_c22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:15 2005
         (393 letters)



>mm_chr6_41592215_41593007
          Length = 793

 Score =  687 bits (355), Expect = 0.0
 Identities = 364/367 (99%)
 Strand = Plus / Plus

                                                                       
Query: 27  gggggtggggggacaaggtgtgtagctcctctagtcaaacaagagtaagcaaacttacta 86
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 gggggtggggggacaaggtgtgtagctcctctagtcaaacaagagtaagcaaacttacta 286

                                                                       
Query: 87  ttacacagcgtctgaattctaggttcacatctaccatcggtttctattcttcatgaatta 146
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 ttacacagcgtctgaattctaggttcacatctaccatcggtttctattcttcatgaatta 346

                                                                       
Query: 147 tctgtttatgtagccaaagatttggagatgtggatgaggtactaggagtctataagaaat 206
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 tctctttatgtagccaaagatttggagatgtggatgaggtactaggagtctataagaaat 406

                                                                       
Query: 207 agtattgtttagggctcaggcaatggtcctgattttctttgtgtctgctcaacccccacc 266
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 407 agtattgtttagggctcaggcaatggtcctgattttctttgtggctgctcaacccccacc 466

                                                                       
Query: 267 cccacccccactttggaaaaggtgtatttgcttctagtcacaacctttcaaaagcacatt 326
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 467 cccacccccactttggaaaaggtgtatttgcttctagtcagaacctttcaaaagcacatt 526

                                                                       
Query: 327 ttatcactgatctttcccccgatttgctcccacctgctcttattctttttctctctccac 386
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 ttatcactgatctttcccccgatttgctcccacctgctcttattctttttctctctccac 586

                  
Query: 387 cccaaga 393
           |||||||
Sbjct: 587 cccaaga 593


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 793
Length adjustment: 9
Effective length of query: 384
Effective length of database: 784
Effective search space:   301056
Effective search space used:   301056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no112_c22.g1 MSMg01no112_c22.g1 CHROMAT_FILE:
MSMg01no112_c22.g1 PHD_FILE: MSMg01no112_c22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:16 2005
         (346 letters)



>mm_chr6_41746089_41746834
          Length = 746

 Score =  646 bits (334), Expect = 0.0
 Identities = 343/346 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagggcatggaggagggtgtgggtaggtggatgagtgggggaacaccctcatagaagcag 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 693 cagggcatggaggagggtgtgtgtaggtggatgagtgggggaacaccctcatagaagcag 634

                                                                       
Query: 61  agggagaggagaaagtggctttctggggataaactgggaaaggagataacatttgaaatg 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 633 agggagaggagaaagtggctttctgggtataaactgggaaaggagataacatttgaaatg 574

                                                                       
Query: 121 taaataaagaaaatatccaataaaaaattctgctttgggaagaaaaagctatagtgatag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 taaataaagaaaatatccaataaaaaattctgctttgggaagaaaaagctatagtgatag 514

                                                                       
Query: 181 tataatagttatttgaataattaaaatatggtcaatttagatattattacgtattattag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 tataatagttatttgaataattaaaatatggtcaatttagatattattacgtattattag 454

                                                                       
Query: 241 catagattcaaactatatcttaatcacctatcaatcactgcggtttctgaattttggaaa 300
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 453 catagattcaaactatatcttaatcacctatcaatcactgtggtttctgaattttggaaa 394

                                                         
Query: 301 atatgaaattatcactctgtaatgctggtcatggagaagtctaagt 346
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 atatgaaattatcactctgtaatgctggtcatggagaagtctaagt 348


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 746
Length adjustment: 9
Effective length of query: 337
Effective length of database: 737
Effective search space:   248369
Effective search space used:   248369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)