Query= MSMg01no112_e15.b1 MSMg01no112_e15.b1 CHROMAT_FILE:
MSMg01no112_e15.b1 PHD_FILE: MSMg01no112_e15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:24 2005
(188 letters)
>mm_chr6_129500177_129500766
Length = 590
Score = 329 bits (170), Expect = 7e-95
Identities = 185/190 (97%), Gaps = 4/190 (2%)
Strand = Plus / Plus
Query: 1 agagagagagaacacactctccatggtacatatcttggcaggtttggcagggtggaacaa 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agagagagagaacacactcttcatggtacatatcttggcaggtttggcagggtggaacaa 260
Query: 61 gtggaatctgggaccttctctggcttaccggtgcccactgagcca-gag-atttagaact 118
|||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 261 gtggaatctgggaccttc-ctggcttaccggtgcccactgagccaagagtatttagaact 319
Query: 119 ctccctcacatgtgggctgatggaaactcagtgtccttatg-agtgcactgccaggcagc 177
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 320 ctccctcacatgtgggctgatggaaactcagtgtccttatgcagtgcactgccaggcagc 379
Query: 178 ccttcctgct 187
||||||||||
Sbjct: 380 ccttcctgct 389
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 188
Length of database: 590
Length adjustment: 8
Effective length of query: 180
Effective length of database: 582
Effective search space: 104760
Effective search space used: 104760
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no112_e15.g1 MSMg01no112_e15.g1 CHROMAT_FILE:
MSMg01no112_e15.g1 PHD_FILE: MSMg01no112_e15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:24 2005
(341 letters)
>mm_chr6_129628538_129629278
Length = 741
Score = 636 bits (329), Expect = 0.0
Identities = 338/341 (99%)
Strand = Plus / Minus
Query: 1 aacattcatttctattagtgttgggatctttggtgtaagcattacctatttcatggtgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 aacattcatttctattagtgttgggatctttggtgtaagcattacctatttcatggtgtt 671
Query: 61 agtcctatgaaaactaaatttaatttataaaacaattctttggtttgtcagcatctttgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 agtcctatgaaaactaaatttaatttataaaacaattctttggtttgtcagcatctttgt 611
Query: 121 tccccattaagttgttgccttatcaaaaatattttgccaaaagttgttgttgctgttgtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 tccccattaagttgttgccttatcaaaaatattttgccaaaagttgttgttgctgttgtt 551
Query: 181 gttgttgttaccacagcacttgtattcattgtccaagggaagaaaaatagattaggttta 240
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 550 gttgttgttaccacagcactcgtattcattgtccaagggaagaaaaatagattaggttta 491
Query: 241 aatttccaactgcaaaatgagtgccattgttccaaactcctccccctttggcctcatcag 300
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 490 aatttccaactgcaaaatgagtgccattgttccaaactcctcctcctttggcctcatcag 431
Query: 301 attgtgtacctttgcctcagtacatcactagctgcagacat 341
|||||||||||||||||||| ||||||||||||||||||||
Sbjct: 430 attgtgtacctttgcctcagcacatcactagctgcagacat 390
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space: 243024
Effective search space used: 243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
