BAC Information

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BAC

Clone NameMSMg01-112M08
Chromosome6 (Build37)
Map Location 53,171,171 - 53,171,376
singlet/doubletsinglet
Overlap geneD430007I03
Upstream geneHoxa9, Hoxa10, Hoxa11, Hoxa13, Evx1, EG666487, 1700094M24Rik, EG545841, Hibadh, Tax1bp1, Jazf1, LOC666259, LOC666516
Downstream geneCreb5, LOC384386, 1200009O22Rik, Cpvl, LOC666305
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-112M08.T7 (MSMg01no112_m08.b1)MSMg01-112M08.TJ (MSMg01no112_m08.g1)
ACCAG325094AG325095
length726827
length of high quality
(start - end)
210 (61 - 270)76 (132 - 207)
definitionCHROMAT_FILE: MSMg01no112_m08.b1 PHD_FILE: MSMg01no112_m08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:02 2005CHROMAT_FILE: MSMg01no112_m08.g1 PHD_FILE: MSMg01no112_m08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTCCAGAAGACCGCGGAATTCCACAGA
CTTTCCTTGCCAGCTGCAGCCTCACCAATGGCTCCGCGTTGGGCCTTGGT
TCATCACGAACTCTGTGATTCCAGAGTTACTGACACTTCACTACCCCAGG
TGAATACCATCTACTACCCAGCAGCCGTGGTTGAACAGACAGGAATGGTT
TGATATTTCTGCAATTTTGTTGCTTTGAGAGTTCTCTGTGGGGTCTTTGG
ACAGTGTATAATCTTATAAAGTTGAAGTACAAAAATGTACCTTTGCCAAT
TTTCTTTTTCCAGTTTCTGCTTCTTAATCTACGCGTCCTCTGAAGACACT
GTTTCATATGCAGTACCCGATCATTCTTAGCTTTCCTCATTTGCAAGTCA
AATTACCCACGCATTATAAGTCTGCAATTGAAATACAACGGGTTTTACTA
GCCTCCTGCCCCCCGTACTCCTATCCTTTTTTACTGATGTCTTTCCCGAT
TTCCCCTATTCCCTTACCGTTGACGTTTATCCTTTGTTGTCCTAGCCATT
TCCCCCCCCTCACTTATTTTTTGCCTTCTCATACTCCTTTATTTGCTTTT
TCCCTCCTGTCCACCTTACGCCCTCTTTATTCCGTCCGTCGACCCTCATT
TTTATGTTGTTCCCTTGCCGGATGTTTCCGCACCCCCCTGAATTTTTATT
GTCCGTTTGCCACTTCTCGGTAGGTG
TATTTCCCCCTTTGCCCCTTTTCTTTTAACCTCTTCTTTCTCCCCCTTCC
CCCTCTTCGCATGCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTGAAAGACATGAACTGC
CCCCAAATGATGAGAATATGTGCCATCAGAATAACTTATAGCAAGTAGAG
CACATATGCACATACACACTCATATGCACACATACAAATCTTATGCGCAA
AACCTCCATGTAAATATATGCACAAACATACATTTATACATACTCTCATG
TATGCACACATTCACATACATGTACAATCATGTACACACAAACACCCTTA
TCATGAGTACACTACACACATACCTCTACACATATTTGACCACTCATAGA
GCACACATATGTGCCACCACAGAGACATGCTTATGCACATACAAACACAC
ACATGTACACACACACACACTTCTTCCCACTATTTTTCATTTATAAAACG
TTAGGACACATAGCTCCACTAATTAATTTTACCCATATATTCCAAAGCCC
TTAACTCCCATAAATCATAAATTTTTCCCATCCTTCCCCTAAATCCCATC
TATCATAGAATTGTTTTCTGAACCCTCTTGTGTCATATCATTTACCTCTT
TGATTATCACACCTTATACGCTATCCCCTAGAATTATTGTCTCTTCAACT
ATTCTCTTAATGAAACCCCAACATCTCTAATCCCCCCTCTAAATTACACT
ATCTCGTTTAAAGCCCCCACCCCCTTTATCCCCCTCTATTCCCACTGGAC
CACCTATTCCATGTTTATGCCATTCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no112_m08.b1 MSMg01no112_m08.b1 CHROMAT_FILE:
MSMg01no112_m08.b1 PHD_FILE: MSMg01no112_m08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:02 2005
         (210 letters)



>mm_chr6_53170971_53171580
          Length = 610

 Score =  368 bits (190), Expect = e-106
 Identities = 202/206 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagctgcagcctcaccaatggctccgcgttgggccttggttcatcacgaactctgtgatt 60
           ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 201 cagctgcagcctcaccaatggctccacgttgggccttggttcatcgcgaactctgtgatt 260

                                                                       
Query: 61  ccagagttactgacacttcactaccccaggtgaataccatctactacccagcagccgtgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccagagttactgacacttcactaccccaggtgaataccatctactacccagcagccgtgg 320

                                                                       
Query: 121 ttgaacagacaggaatggtttgatatttctgcaattttgttgctttgagagttctctgtg 180
            ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 ctgaacagacaggaatggtttgatatttctgcaattttgttgttttgagagttctctgtg 380

                                     
Query: 181 gggtctttggacagtgtataatctta 206
           ||||||||||||||||||||||||||
Sbjct: 381 gggtctttggacagtgtataatctta 406


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 210
Length of database: 610
Length adjustment: 9
Effective length of query: 201
Effective length of database: 601
Effective search space:   120801
Effective search space used:   120801
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)