BAC Information

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BAC

Clone NameMSMg01-112M20
Chromosome6 (Build37)
Map Location 7,141,967 - 7,142,335
singlet/doubletsinglet
Overlap geneEG667500
Upstream geneSlc25a13, EG667462, EG667468, LOC667471, LOC100040096, Shfm1, LOC545826, Dlx6as, Dlx5, Acn9
Downstream geneTac1, LOC667511, Asns, EG667529, C1galt1, LOC100040661, Col28a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-112M20.T7 (MSMg01no112_m20.b1)MSMg01-112M20.TJ (MSMg01no112_m20.g1)
ACCAG325117AG325118
length744747
length of high quality
(start - end)
440 (74 - 513)378 (75 - 452)
definitionCHROMAT_FILE: MSMg01no112_m20.b1 PHD_FILE: MSMg01no112_m20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:04 2005CHROMAT_FILE: MSMg01no112_m20.g1 PHD_FILE: MSMg01no112_m20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAAAAGGCGCGG
AATTCTCACCTGATTCCTACAGAATGGCAGAGAAGCACCTGAAAAAATGT
TCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACACTGAGATT
CCACTTCACTCCAGTCAGAATGGCTAAGATCAAAAACTCAGGTGACAGCA
GATGCTGGCAAGGATGTGGAGAAAGGGAAACACTCCTCCATTGTTGGCGG
GATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAG
AAAATTGGACATAGTACTACCGTATGATCCCGCAATACCTCTCCTGGGCA
TATATCCAGAAGATGTCCCAACCGGTAAGAAGAACACATGCTCCACTATG
TTCATAGCAGCCTTGTTTATAATAGCCAGAAGCTGGAAAGAACCCAGATG
CCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGG
AATACTACTCAGCTATTAAAAAAATGAATTTATGAAATTCCTAGGCAAAT
GGATGGACCTGGAGGGTATCATCCTGAGCGAAGTAACCCAATCACAAACG
AACTCGCACACTATGTACTCACTGATAACTGCATATCAGCCCAGAAACTT
AGGATACCCCACATATAACACACTACTTGCCAAACGCATGAAATTCATGA
AGAACCAAGACCAAAGTGTGGACACTCTACCCTTTCTTAGAAAG
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGCACAAGAGGGTG
AACTATAGAAGGTTCCCAGAAATTCTTTGAATTTTTGGTACTGAATCCTG
CGTGGGTAATCAAGGCCTTTTATGCAAAAGGGCTGAAGAAGAGAGAATGG
AAGGTTGTGGTTACTTTGATGGCTTTAGATGCAGCCAGAATCAACTGTGA
GGAGAAGATTTGCATTTTCTCCTGCATCCTTGGTTTTACTGATTTGAAGA
TGTGGAGGAAAAGAAAATTCTTCCCTCCACTATTGGAAGATGCAAATCTT
TAAGTTTGCCAAAATAGACTGATTTCATATAGAATAACAGGGGCAAAAAG
CAGGCAAATTTATATAATGTCTACAGGAACTATCTAGAACAAAACCCAAA
GTGGTTGAGATGAAAATACTCACTTTTAAGAAATTTAAAAAAAGGGGTGT
GGGGGGAACAGTATTGTAGCCTTATAGAGATAGTAAATGGTTTGTTTGTT
TGTTTGCTCGTCTGTTTGCTTGTTTTTAGAAAGGGACCGAGACAGACGGA
CAATGGCCTGTTTCATAATTCCCCTGCAGTCAAGGTTTAGTTGATTTTCA
GGCTCCTTTCTGTGACTAACCCTTCTAGGTTACTGAGATTTCCTAGTGAC
AGTATTCTTGGAAATTCGATTAGCCAGACCGGACAACTTCCCAGAATCCT
TTCCCCGCGCCTCAGGGGAAAAGGCTCAGAAATTCCATATACCTGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no112_m20.g1 MSMg01no112_m20.g1 CHROMAT_FILE:
MSMg01no112_m20.g1 PHD_FILE: MSMg01no112_m20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:04 2005
         (378 letters)



>mm_chr6_7141766_7142544
          Length = 779

 Score =  615 bits (318), Expect = e-180
 Identities = 357/370 (96%), Gaps = 2/370 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctttgaatttttggtactgaatcctgcgtgggtaatcaagg-ccttttatgcaaaagggc 59
           ||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 570 ctttgcatttttggtactgaatcctgcgtgggtaatcaagggccttttatggaaaagggc 511

                                                                       
Query: 60  tgaagaagagagaatggaaggttgtggttactttgatggctttagatgcagccagaatca 119
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 510 tgaagaagagagaatggaaggtcgtggttactttgatggctttagatgcagccagaatca 451

                                                                       
Query: 120 actgtgaggagaagatttgcattttctcctgcatccttggttttactgatttgaagatgt 179
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 450 actgtgaggagaagatttgcattttctcctgcatccttggttttattgatttgaagatgt 391

                                                                       
Query: 180 ggaggaaaagaaaattcttccctccactattggaagatgcaaatctttaagtttgccaaa 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ggaggaaaagaaaattcttccctccactattggaagatgcaaatctttaagtttgccaaa 331

                                                                       
Query: 240 atagactgatttcatatagaataacaggggcaaaaagcaggcaaatttatataatgtcta 299
           |||||||||   || ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 330 atagactgacaacagatagactaacaggggcaaaaagcaggcaaatttatataatgtcta 271

                                                                       
Query: 300 caggaactatctagaacaaaacccaaagtggttgagatgaaaatactcacttttaagaaa 359
           |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 270 caggaactatctagaacagaactcaaagtggttgagatgaaaatactcacttttaagaaa 211

                     
Query: 360 tttaaaaaaa 369
           || |||||||
Sbjct: 210 tt-aaaaaaa 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 378
Length of database: 779
Length adjustment: 9
Effective length of query: 369
Effective length of database: 770
Effective search space:   284130
Effective search space used:   284130
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)