Query= MSMg01no112_n09.b1 MSMg01no112_n09.b1 CHROMAT_FILE:
MSMg01no112_n09.b1 PHD_FILE: MSMg01no112_n09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:06 2005
(248 letters)
>mm_chr6_36846981_36847628
Length = 648
Score = 470 bits (243), Expect = e-137
Identities = 246/247 (99%)
Strand = Plus / Minus
Query: 1 gtctttttctcagttccctgtatttgaatgaaatacgaatgtcagtggcaccaacaaagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gtctttttctcagttccctgtatttgaatgaaatacgaatgtcagtggcaccaacaaagt 388
Query: 61 cataaagcatatcaaaaaacatatatattgcataaatcataataaagtctggcagtcagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 cataaagcatatcaaaaaacatatatattgcataaatcataataaagtctggcagtcagg 328
Query: 121 aaaatatagaggagaactctacctgagttattagtaagtgttagtaatagttcatcgtgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 aaaatatagaggagaactctacctgagttattagtaagtgttagtaatagttcatcgtgt 268
Query: 181 gaatgcaacacctacctctaagactgtgtacatggaaggaaattaaacaagttctggccc 240
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 gaaggcaacacctacctctaagactgtgtacatggaaggaaattaaacaagttctggccc 208
Query: 241 aagtctc 247
|||||||
Sbjct: 207 aagtctc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space: 152721
Effective search space used: 152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no112_n09.g1 MSMg01no112_n09.g1 CHROMAT_FILE:
MSMg01no112_n09.g1 PHD_FILE: MSMg01no112_n09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:06 2005
(511 letters)
>mm_chr6_36701290_36702207
Length = 918
Score = 857 bits (443), Expect = 0.0
Identities = 497/519 (95%), Gaps = 9/519 (1%)
Strand = Plus / Plus
Query: 1 tgaaggtagaaagcagatacacaagaacatatcccagcaggtaagcagaacacagcattt 60
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 tgaaggtagaaagcagacacacaagaacatatcccagcaggtgagcagaacacagcattt 260
Query: 61 ttctgcaagaggagctaaa--atatattttctttcttatttttaaagcctattaaatcta 118
||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||
Sbjct: 261 ttctgcaagaggagctaaaatatatattttatttattatttttaaagcctattaaatcta 320
Query: 119 ttgcccccatggtgcttgagaagttcagaccttgttaagactggtttattttaagtcaaa 178
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgcccccatggtgcttgggaagtacagaccttgttaagactggtttattttaagtcaaa 380
Query: 179 ggtctgttagacaaatataatacccttcttttatctttatgctttgcaattttactgaac 238
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtctgttaaacaaatataatacccttcttttatctttatgctttgcaattttactgaac 440
Query: 239 ggtcattttgttgcttcctatattatacttgagaacttgttcctaaaggagatttttatt 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtcattttgttgcttcctatattatacttgagaacttgttcctaaaggagatttttatt 500
Query: 299 gttttgattgtagtttttcttattctttgttccactttctttttttt------attgtta 352
||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 501 gttttgattgtagtttttcttattctttgttccactttcttttttttttatttattgtta 560
Query: 353 ttaactttacattggtccactgtaaaaaagatcaggacatttccctggagtcgtgtcgtc 412
||||||||||||||||| |||||||||| ||||||||||||||||||||||| | ||||
Sbjct: 561 ttaactttacattggtctactgtaaaaa-gatcaggacatttccctggagtcataccgtc 619
Query: 413 ttataaactggcttatgatattgctaagtcatcacttactctagccttcttgaactcgct 472
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ttataagctggcttatgatattgctaagtcatcacttactctagccttcttgaactcgct 679
Query: 473 tatttaaaactgagtctcgcaaaaaattgtcccacgtat 511
||||||||||||||||| |||||||||||||||||||||
Sbjct: 680 tatttaaaactgagtcttgcaaaaaattgtcccacgtat 718
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 918
Length adjustment: 10
Effective length of query: 501
Effective length of database: 908
Effective search space: 454908
Effective search space used: 454908
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
