BAC Information

Click to search

BAC

Clone NameMSMg01-113C23
Chromosome6 (Build37)
Map Location 78,426,400 - 78,426,637
singlet/doubletsinglet
Overlap genenone
Upstream geneCtnna2, LOC668169, EG434050, Pap, Reg3d, Reg3a, Reg2, Reg1, Reg3g
Downstream geneLOC621716, Ppia-ps6_789.1, LOC384440
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-113C23.T7 (MSMg01no113_c23.b1)MSMg01-113C23.TJ (MSMg01no113_c23.g1)
ACCAG325397AG325398
length692697
length of high quality
(start - end)
---238 (69 - 306)
definitionCHROMAT_FILE: MSMg01no113_c23.b1 PHD_FILE: MSMg01no113_c23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:33 2005CHROMAT_FILE: MSMg01no113_c23.g1 PHD_FILE: MSMg01no113_c23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GAGATGGGGGGGGGGGGGGGGGTCCCGACGGGGGGGGGGGGGGGGGTTGC
GAAAGAAGAAGGGGGGGGGGGAGGGGAGAGCACCGAGNAGCAGGCGGGGC
CGAGGCCGACAACGCTCGGAGCCCGCGACGCGGCGGGAGGCGGAGNGACA
AGGGGCGCCCGGGGGGGGGNACAGGAGCGGGGGGGGGGAGGGGGCCACAG
GCAGGGGGGGGGGGCGGAGGGACACCCGGGGCCGGGGCGGGGCACACGCG
GGGCGGCGCGGGGCCGGTCCACGCGTGGGGGGCCCATTTTTTTGCCCGCN
ACNCGCGGACCAGCGAGCCCACACCGCCACTCCCGCCGCGCACNGGGGGC
GCGNAACCACGNGGGGGGGCGTGCGGGGGGTAAACGGGGGAGGGGGGGGG
AAAGTGGCGATTTTACCCCGGGCCGTGTGCGGGGGGGGGAAAAACGACAC
GTGNGTGAGGGGTGGGGGGCGGCGGGCGGGAATGGCCCGGGGGGGAGGGG
AAAAAGGGGGGGGGGGGGCGCGGGGGCAGGTGGGGCGACGGGGTAGGGGG
GGGGGAGCCACCACAGGGGGGGGGGGGGCCAACCGGGAGGCCGGGGGGGG
GGGTGCGGGGCCCACTCGGGGGGGGGGCGGGCGGGGTNTATGGGACCGGC
AGGGCGGGGGGTGGGTGCCCCGGAACGGGGGGGTGACCCAGG
GCATGGGTAGGCCTGGGGCGCCTGTTTCACACCTGAGGTGAACTATAAAA
TTTTCGCAAAATTCCTCCAAACACTGGAAATTCCTACTAGACTAGCATGA
ACAGACCCAAGATAAATCCCGTTGCCCAGGGAACTCAAAAATGAAGTGAG
AAATGCCAATTACAGGATTCAAGAAGGTTTTGTAGTTAGGTTATTCTACC
TGAGTATGGAAGTCATGTGTTTTAGGATAGGGAAACATGAGGTTGGGGTT
CCCAACAGACATCCTAGCTTATAAAATTAGATTAAAAAAGATATTATGGA
TCCTTTATTATATGGTAATACCTTCTCTATCCATGATATTCACAAAATCA
CTCAGACCTATATTTTCTTTTATTTTTTAATTTTTTTTCCATTTTTATTA
GGCATTCAGCTCATTTACATTTCCCACCCCTACTCCCCTGCTTACCCACT
CCCCCTTTTTGGCCCTAATGCGTTCCCTGGACTGGGGGATATAAAGTTTG
TAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTT
GATATATATGCAGGTACACCCAAGACCTCCGGGGTAATGGTTAGACCATA
ATGTTGTTCTCCCTATAAGGGTGCAAATTCCTTTAACACCTCGATTACTT
TCTCTAAGCCCCCCATTGGAAGCCTTAGGATCTTTTCTTTGGTCGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no113_c23.g1 MSMg01no113_c23.g1 CHROMAT_FILE:
MSMg01no113_c23.g1 PHD_FILE: MSMg01no113_c23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:33 2005
         (238 letters)



>mm_chr6_78426200_78426837
          Length = 638

 Score =  377 bits (195), Expect = e-109
 Identities = 228/239 (95%), Gaps = 2/239 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaacactgg-aaattcctactagactagcatgaacagacccaagataaatcccgttgccc 59
           ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 aaacactggaaaattcctactagactagcatgaacacacccaagataaatcccgttgccc 260

                                                                       
Query: 60  agggaactcaaaaatgaagtgagaaatgccaattacaggattcaagaaggttttgtagtt 119
           |||| |||  | |||||||||||||||||||||| ||| |||||||||||||||||||| 
Sbjct: 261 agggcacttgacaatgaagtgagaaatgccaatttcagtattcaagaaggttttgtagtc 320

                                                                       
Query: 120 aggttattctacctgagtatggaagtcatgtgttttaggatagggaaacatgaggttggg 179
           |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 321 aggttattctacctgagtatggaagtcatgtgttttaggatagggaaacaagaggt-ggg 379

                                                                      
Query: 180 gttcccaacagacatcctagcttataaaattagattaaaaaagatattatggatccttt 238
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gttcccaacagacatcctagcttataaaattagattaaaaaagatattatggatccttt 438


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)