MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-113H05
Chromosome	6 (Build37)
Map Location	56,331,486 - 56,331,626
singlet/doublet	singlet
Overlap gene	none
Upstream gene	Ghrhr, Adcyap1r1, LOC100042219, Neurod6, LOC100041339, Ccdc129, Gsbs, LOC100041357, Pde1c
Downstream gene	EG666688, Lsm5, 5830411G16Rik, LOC100042288, Kbtbd2, Fkbp9, Nt5c3, LOC100042327, V1rc21, V1rc19, V1rc20, EG434016, V1rc32, V1rc30, V1rc1, V1rc3, EG626397, V1rc4, V1rc5, V1rc7, V1rc6, LOC100041445, V1r-ps6, V1rc29, V1rc16
Link	Open Mouse BAC browser

Click to get alignment info.

name	Ghrhr (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14602 MGI:95710
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Adcyap1r1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11517 MGI:108449
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	LOC100042219 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042219
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Neurod6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11922 MGI:106593
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100041339 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041339
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs

name	Ccdc129 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:232016 MGI:2685304
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gsbs (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19051 MGI:1333876
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100041357 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041357
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	Pde1c (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18575 MGI:108413
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	EG666688 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:666688 MGI:3644042
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs

name	Lsm5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66373 MGI:1913623
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	5830411G16Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:78937 MGI:1926187
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 141 ESTs, 3 Proteins

name	LOC100042288 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042288
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 5 ESTs, 1 Protein pseudo : _no_value

name	Kbtbd2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:210973 MGI:2384811
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Fkbp9 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:27055 MGI:1350921
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Nt5c3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:107569 MGI:1927186
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042327 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042327
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	V1rc21 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:171194 MGI:2159457
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	V1rc19 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:171192 MGI:2159455
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	V1rc20 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:171193 MGI:2159456
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG434016 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:434016 MGI:3644380
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 58 Proteins

name	V1rc32 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:171205 MGI:2159469
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	V1rc30 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:171203 MGI:2159466
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	V1rc1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:113858 MGI:2148522
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	V1rc3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:113860 MGI:2148524
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG626397 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:626397 MGI:3645555
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 52 Proteins

name	V1rc4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:113861 MGI:2148525
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 12 Proteins pseudo : _no_value

name	V1rc5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:113862 MGI:2148526
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	V1rc7 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:113864 MGI:2148528
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	V1rc6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:113863 MGI:2148527
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100041445 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041445
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 17 Proteins pseudo : _no_value

name	V1r-ps6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:113874 MGI:2148536
definition	note : vomeronasal 1 receptor, pseudogene 6 pseudo : _no_value

name	V1rc29 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:171202 MGI:2159465
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	V1rc16 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:171189 MGI:2159452
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ghrhr (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:51100961 GeneID:14602 MGI:95710
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : growth hormone releasing hormone receptor transcript_id : NM_001003685.1

name	Adcyap1r1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:70780367 GeneID:11517 MGI:108449
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : adenylate cyclase activating polypeptide 1 receptor 1 transcript_id : NM_007407.3

name	Adcyap1r1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:70780369 GeneID:11517 MGI:108449
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : adenylate cyclase activating polypeptide 1 receptor 1 transcript_id : NM_001025372.1

name	LOC100042219 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149255192 GeneID:100042219
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100042219 transcript_id : XM_001478152.1

name	Neurod6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6753129 GeneID:11922 MGI:106593
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : neurogenic differentiation 6 transcript_id : NM_009717.1

name	LOC100041339 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149255139 GeneID:100041339
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs product : hypothetical protein LOC100041339 transcript_id : XM_001476194.1

name	Ccdc129 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:126158912 GeneID:232016 MGI:2685304
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : coiled-coil domain containing 129 transcript_id : NM_001081665.1

name	Gsbs (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118129788 GeneID:19051 MGI:1333876
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : G substrate transcript_id : NM_011153.3

name	Pde1c (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803532 GeneID:18575 MGI:108413
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : phosphodiesterase 1C transcript_id : NM_011054.2

name	Pde1c (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:70909351 GeneID:18575 MGI:108413
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : phosphodiesterase 1C transcript_id : NM_001025568.1

name	EG666688 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94377385 GeneID:666688 MGI:3644042
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs product : predicted gene, EG666688 transcript_id : XM_985410.1

name	Lsm5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:42476201 GeneID:66373 MGI:1913623
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae) transcript_id : NM_025520.2

name	5830411G16Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94377387 GeneID:78937 MGI:1926187
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 141 ESTs, 3 Proteins product : RIKEN cDNA 5830411G16 gene, transcript variant 1 transcript_id : XM_132538.6

name	Kbtbd2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:22122390 GeneID:210973 MGI:2384811
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : kelch repeat and BTB (POZ) domain containing 2 transcript_id : NM_145958.1

name	Fkbp9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:27532951 GeneID:27055 MGI:1350921
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : FK506 binding protein 9 transcript_id : NM_012056.1

name	Nt5c3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142348961 GeneID:107569 MGI:1927186
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : 5'-nucleotidase, cytosolic III transcript_id : NM_026004.2

name	LOC100042327 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149255195 GeneID:100042327
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100042327 transcript_id : XM_001478378.1

name	V1rc21 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21717672 GeneID:171194 MGI:2159457
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : vomeronasal 1 receptor, C21 transcript_id : NM_134176.1

name	V1rc19 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133922604 GeneID:171192 MGI:2159455
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : vomeronasal 1 receptor, C19 transcript_id : NM_134174.2

name	V1rc20 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21717678 GeneID:171193 MGI:2159456
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : vomeronasal 1 receptor, C20 transcript_id : NM_134175.1

name	EG434016 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149255142 GeneID:434016 MGI:3644380
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 58 Proteins product : predicted gene, EG434016 transcript_id : XM_620311.3

name	V1rc32 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:112821673 GeneID:171205 MGI:2159469
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : vomeronasal 1 receptor, C32 transcript_id : NM_134187.3

name	V1rc30 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21717698 GeneID:171203 MGI:2159466
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : vomeronasal 1 receptor, C30 transcript_id : NM_134185.1

name	V1rc1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118200346 GeneID:113858 MGI:2148522
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : vomeronasal 1 receptor, C1 transcript_id : NM_053231.2

name	V1rc3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:16716548 GeneID:113860 MGI:2148524
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : vomeronasal 1 receptor, C3 transcript_id : NM_053233.1

name	EG626397 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:82901075 GeneID:626397 MGI:3645555
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 52 Proteins product : predicted gene, EG626397 transcript_id : XM_890986.1

name	V1rc5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110611162 GeneID:113862 MGI:2148526
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : vomeronasal 1 receptor, C5 transcript_id : NM_053235.2

name	V1rc7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110611160 GeneID:113864 MGI:2148528
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : vomeronasal 1 receptor, C7 transcript_id : NM_053237.2

name	V1rc6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:16716554 GeneID:113863 MGI:2148527
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : vomeronasal 1 receptor, C6 transcript_id : NM_053236.1

name	V1rc29 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110611911 GeneID:171202 MGI:2159465
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : vomeronasal 1 receptor, C29 transcript_id : NM_134184.2

name	V1rc16 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21717670 GeneID:171189 MGI:2159452
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : vomeronasal 1 receptor, C16 transcript_id : NM_134171.1

name	Ghrhr (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:51100962 CCDS:CCDS20165.1 GeneID:14602 MGI:95710
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA]; GO:0004999 - vasoactive intestinal polypeptide receptor activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 exception : mismatches in translation product : growth hormone releasing hormone receptor protein_id : NP_001003685.1

name	Adcyap1r1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:70780368 CCDS:CCDS20167.1 GeneID:11517 MGI:108449
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence TAS]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA]; GO:0004999 - vasoactive intestinal polypeptide receptor activity [Evidence TAS] GO_process : GO:0030154 - cell differentiation [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence TAS]; GO:0007165 - signal transduction [Evidence IEA]; GO:0007283 - spermatogenesis [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1 product : adenylate cyclase activating polypeptide 1 receptor 1 isoform 1 protein_id : NP_031433.3

name	Adcyap1r1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:70780370 CCDS:CCDS20166.1 GeneID:11517 MGI:108449
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence TAS]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA]; GO:0004999 - vasoactive intestinal polypeptide receptor activity [Evidence TAS] GO_process : GO:0030154 - cell differentiation [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence TAS]; GO:0007165 - signal transduction [Evidence IEA]; GO:0007283 - spermatogenesis [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2 product : adenylate cyclase activating polypeptide 1 receptor 1 isoform 2 protein_id : NP_001020543.1

name	LOC100042219 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149255193 GeneID:100042219
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001478202.1

name	Neurod6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753130 CCDS:CCDS20168.1 GeneID:11922 MGI:106593
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0030528 - transcription regulator activity [Evidence IEA] GO_process : GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : atonal homolog 2 product : neurogenic differentiation 6 protein_id : NP_033847.1

name	LOC100041339 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149255140 GeneID:100041339
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001476244.1

name	Ccdc129 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:126158913 GeneID:232016 MGI:2685304
definition	codon_start : 1 product : coiled-coil domain containing 129 protein_id : NP_001075134.1

name	Gsbs (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755148 CCDS:CCDS20169.1 GeneID:19051 MGI:1333876
definition	GO_component : GO:0005829 - cytosol [Evidence TAS] GO_function : GO:0004864 - protein phosphatase inhibitor activity [Evidence IDA]; GO:0004865 - type 1 serine/threonine specific protein phosphatase inhibitor activity [Evidence IDA] codon_start : 1 note : G-substrate; protein phosphatase 1, regulatory (inhibitor) 2 product : G substrate protein_id : NP_035283.1

name	Pde1c (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755008 CCDS:CCDS20170.1 GeneID:18575 MGI:108413
definition	GO_function : GO:0004114 - 3',5'-cyclic-nucleotide phosphodiesterase activity [Evidence IEA]; GO:0005516 - calmodulin binding [Evidence IEA]; GO:0003824 - catalytic activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA] GO_process : GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 function : high affinity cAMP and cGMP calmodulin-dependent phosphodiesterase note : isoform a is encoded by transcript variant 1 product : phosphodiesterase 1C isoform a protein_id : NP_035184.1

name	Pde1c (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:70909352 GeneID:18575 MGI:108413
definition	GO_function : GO:0004114 - 3',5'-cyclic-nucleotide phosphodiesterase activity [Evidence IEA]; GO:0005516 - calmodulin binding [Evidence IEA]; GO:0003824 - catalytic activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA] GO_process : GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : isoform b is encoded by transcript variant 2 product : phosphodiesterase 1C isoform b protein_id : NP_001020739.1

name	EG666688 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94377386 GeneID:666688 MGI:3644042
definition	codon_start : 1 product : hypothetical protein protein_id : XP_990504.1

name	Lsm5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13384942 GeneID:66373 MGI:1913623
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS]; GO:0005634 - nucleus [Evidence IEA]; GO:0030529 - ribonucleoprotein complex [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0046982 - protein heterodimerization activity [Evidence ISS]; GO:0003723 - RNA binding [Evidence IEA] GO_process : GO:0006402 - mRNA catabolism [Evidence ISS]; GO:0016071 - mRNA metabolism [Evidence IEA]; GO:0006397 - mRNA processing [Evidence IEA]; GO:0000398 - nuclear mRNA splicing, via spliceosome [Evidence IEA] codon_start : 1 product : LSM5 homolog, U6 small nuclear RNA associated protein_id : NP_079796.1

name	5830411G16Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94377388 GeneID:78937 MGI:1926187
definition	codon_start : 1 product : hypothetical protein LOC78937 isoform 1 protein_id : XP_132538.5

name	Kbtbd2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22122391 GeneID:210973 MGI:2384811
definition	GO_function : GO:0005515 - protein binding [Evidence IEA] codon_start : 1 note : BTB and kelch domain containing 1 product : kelch repeat and BTB (POZ) domain containing 2 protein_id : NP_666070.1

name	Fkbp9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27532952 GeneID:27055 MGI:1350921
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA] [Evidence IDA] GO_function : GO:0005509 - calcium ion binding [Evidence IDA] [Evidence IEA]; GO:0016853 - isomerase activity [Evidence IEA]; GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA] GO_process : GO:0006457 - protein folding [Evidence IEA] [Evidence IDA] codon_start : 1 exception : mismatches in translation product : FK506 binding protein 9 protein_id : NP_036186.1

name	Nt5c3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27229034 CCDS:CCDS20171.1 GeneID:107569 MGI:1927186
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS]; GO:0005783 - endoplasmic reticulum [Evidence ISS] GO_function : GO:0008665 - 2'-phosphotransferase activity [Evidence ISS]; GO:0008253 - 5'-nucleotidase activity [Evidence ISS]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence ISS]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0009117 - nucleotide metabolism [Evidence IEA]; GO:0006213 - pyrimidine nucleoside metabolism [Evidence ISS] codon_start : 1 exception : mismatches in translation note : uridine monophosphatase 1; 5'-nucleotidase, pyrimidine product : 5'-nucleotidase, cytosolic III protein_id : NP_080280.2

name	LOC100042327 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149255196 GeneID:100042327
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001478428.1

name	V1rc21 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21717673 CCDS:CCDS20172.1 GeneID:171194 MGI:2159457
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence ISS] GO_function : GO:0005550 - pheromone binding [Evidence ISS]; GO:0016503 - pheromone receptor activity [Evidence IEA] [Evidence ISS]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA] GO_process : GO:0019236 - response to pheromone [Evidence ISS] codon_start : 1 product : vomeronasal 1 receptor, C21 protein_id : NP_598937.1

name	V1rc19 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:133922605 GeneID:171192 MGI:2159455
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0005887 - integral to plasma membrane [Evidence ISS] GO_function : GO:0005550 - pheromone binding [Evidence ISS]; GO:0016503 - pheromone receptor activity [Evidence IEA] [Evidence ISS]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0019236 - response to pheromone [Evidence ISS] codon_start : 1 product : vomeronasal 1 receptor, C19 protein_id : NP_598935.2

name	V1rc20 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21717679 CCDS:CCDS20173.1 GeneID:171193 MGI:2159456
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0005887 - integral to plasma membrane [Evidence ISS] GO_function : GO:0005550 - pheromone binding [Evidence ISS]; GO:0016503 - pheromone receptor activity [Evidence IEA] [Evidence ISS]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0019236 - response to pheromone [Evidence ISS] codon_start : 1 product : vomeronasal 1 receptor, C20 protein_id : NP_598936.1

name	EG434016 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149255143 GeneID:434016 MGI:3644380
definition	codon_start : 1 product : similar to vomeronasal receptor V1RC31 protein_id : XP_620311.3

name	V1rc32 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21717693 CCDS:CCDS20174.1 GeneID:171205 MGI:2159469
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0005887 - integral to plasma membrane [Evidence ISS] GO_function : GO:0005550 - pheromone binding [Evidence ISS]; GO:0016503 - pheromone receptor activity [Evidence IEA] [Evidence ISS]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0019236 - response to pheromone [Evidence ISS] codon_start : 1 note : vomeronasal 1 receptor, C30 product : vomeronasal 1 receptor, C32 protein_id : NP_598948.1

name	V1rc30 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21717699 GeneID:171203 MGI:2159466
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0005887 - integral to plasma membrane [Evidence ISS] GO_function : GO:0005550 - pheromone binding [Evidence ISS]; GO:0016503 - pheromone receptor activity [Evidence IEA] [Evidence ISS]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0019236 - response to pheromone [Evidence ISS] codon_start : 1 exception : mismatches in translation product : vomeronasal 1 receptor, C30 protein_id : NP_598946.1

name	V1rc1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:118200347 GeneID:113858 MGI:2148522
definition	GO_function : GO:0004872 - receptor activity [Evidence ISS] [Evidence IEA] GO_process : GO:0007606 - sensory perception of chemical stimulus [Evidence TAS] codon_start : 1 product : vomeronasal 1 receptor, C1 protein_id : NP_444461.2

name	V1rc3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:16716549 CCDS:CCDS20175.1 GeneID:113860 MGI:2148524
definition	GO_function : GO:0004872 - receptor activity [Evidence ISS] [Evidence IEA] GO_process : GO:0007606 - sensory perception of chemical stimulus [Evidence TAS] codon_start : 1 exception : mismatches in translation product : vomeronasal 1 receptor, C3 protein_id : NP_444463.1

name	EG626397 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82901076 GeneID:626397 MGI:3645555
definition	codon_start : 1 product : similar to vomeronasal 1 receptor, C7 protein_id : XP_896079.1

name	V1rc5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110611163 CCDS:CCDS20176.1 GeneID:113862 MGI:2148526
definition	GO_function : GO:0004872 - receptor activity [Evidence ISS] [Evidence IEA] GO_process : GO:0007606 - sensory perception of chemical stimulus [Evidence TAS] codon_start : 1 product : vomeronasal 1 receptor, C5 protein_id : NP_444465.2

name	V1rc7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110611161 CCDS:CCDS20177.1 GeneID:113864 MGI:2148528
definition	GO_function : GO:0004872 - receptor activity [Evidence ISS] [Evidence IEA] GO_process : GO:0007606 - sensory perception of chemical stimulus [Evidence TAS] codon_start : 1 product : vomeronasal 1 receptor, C7 protein_id : NP_444467.2

name	V1rc6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:16716555 CCDS:CCDS20178.1 GeneID:113863 MGI:2148527
definition	GO_function : GO:0004872 - receptor activity [Evidence ISS] [Evidence IEA] GO_process : GO:0007606 - sensory perception of chemical stimulus [Evidence TAS] codon_start : 1 exception : mismatches in translation product : vomeronasal 1 receptor, C6 protein_id : NP_444466.1

name	V1rc29 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110611912 CCDS:CCDS20179.1 GeneID:171202 MGI:2159465
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0005887 - integral to plasma membrane [Evidence ISS] GO_function : GO:0005550 - pheromone binding [Evidence ISS]; GO:0016503 - pheromone receptor activity [Evidence IEA] [Evidence ISS]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0019236 - response to pheromone [Evidence ISS] codon_start : 1 product : vomeronasal 1 receptor, C29 protein_id : NP_598945.2

name	V1rc16 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21717671 CCDS:CCDS20180.1 GeneID:171189 MGI:2159452
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0005887 - integral to plasma membrane [Evidence ISS] GO_function : GO:0005550 - pheromone binding [Evidence ISS]; GO:0016503 - pheromone receptor activity [Evidence IEA] [Evidence ISS]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0019236 - response to pheromone [Evidence ISS] codon_start : 1 product : vomeronasal 1 receptor, C16 protein_id : NP_598932.1

name	LOC100041357 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041357
definition	number : 1 pseudo : _no_value

name	V1rc4 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:113861
definition	number : 1 pseudo : _no_value

name	V1rc4 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:113861
definition	number : 2 pseudo : _no_value

name	LOC100041445 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041445
definition	number : 1 pseudo : _no_value

name	LOC100041445 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041445
definition	number : 2 pseudo : _no_value

name	(CDS detail)
type	STS
link
xref	UniSTS:142579
definition	standard_name : D6Jcs25

name	(CDS detail)
type	STS
link
xref	UniSTS:124621
definition	standard_name : 46.MMHAP28FRH10.seq

name	(CDS detail)
type	STS
link
xref	UniSTS:272954
definition	standard_name : PMC315446P1

name	(CDS detail)
type	STS
link
xref	UniSTS:164324
definition	standard_name : AI846590

name	(CDS detail)
type	STS
link
xref	UniSTS:130869
definition	standard_name : D6Mit316

name	(CDS detail)
type	STS
link
xref	UniSTS:125713
definition	standard_name : U29086

name	(CDS detail)
type	STS
link
xref	UniSTS:179377
definition	standard_name : D44480

name	(CDS detail)
type	STS
link
xref	UniSTS:243902
definition	standard_name : BF386980

name	(CDS detail)
type	STS
link
xref	UniSTS:273364
definition	standard_name : PMC57740P1

name	(CDS detail)
type	STS
link
xref	UniSTS:141459
definition	standard_name : D0Nds23

name	(CDS detail)
type	STS
link
xref	UniSTS:130825
definition	standard_name : D6Mit278

name	(CDS detail)
type	STS
link
xref	UniSTS:93396
definition	standard_name : AL033984

name	(CDS detail)
type	STS
link
xref	UniSTS:144147
definition	standard_name : Pde1c

name	(CDS detail)
type	STS
link
xref	UniSTS:163387
definition	standard_name : L76946

name	(CDS detail)
type	STS
link
xref	UniSTS:207963
definition	standard_name : BB433962

name	(CDS detail)
type	STS
link
xref	UniSTS:225098
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:186271
definition	standard_name : 09.MMHAP58FLC3.seq

name	(CDS detail)
type	STS
link
xref	UniSTS:128932
definition	standard_name : D1Mit73

name	(CDS detail)
type	STS
link
xref	UniSTS:130790
definition	standard_name : D6Mit241

name	(CDS detail)
type	STS
link
xref	UniSTS:224848
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:210588
definition	standard_name : RH136608

name	(CDS detail)
type	STS
link
xref	UniSTS:185668
definition	standard_name : AU041156

name	(CDS detail)
type	STS
link
xref	UniSTS:20125
definition	standard_name : WI-11592

name	(CDS detail)
type	STS
link
xref	UniSTS:261562
definition	standard_name : AA819232

name	(CDS detail)
type	STS
link
xref	UniSTS:179379
definition	standard_name : AW549641

name	(CDS detail)
type	STS
link
xref	UniSTS:207965
definition	standard_name : AW742329

name	(CDS detail)
type	STS
link
xref	UniSTS:164325
definition	standard_name : AI842776

name	(CDS detail)
type	STS
link
xref	UniSTS:207964
definition	standard_name : BB491051

name	(CDS detail)
type	STS
link
xref	UniSTS:207966
definition	standard_name : AW556929

name	(CDS detail)
type	STS
link
xref	UniSTS:495076
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:493139
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:495562
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:484925
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:491562
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:489279
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:494240
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:489279
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:494240
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:495551
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:492639
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:495551
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:492639
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:487396
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:495552
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:488214
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:494018
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:490618
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:495553
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:487397
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:493142
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:494239
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:484927
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:491561
definition

name	LOC100042288 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149255194 GeneID:100042288
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 5 ESTs, 1 Protein product : similar to 2855 is the position of the first start codon in ORF 2; putative pseudo : _no_value transcript_id : XR_033632.1

clone name	MSMg01-521C08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-101L20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-538P06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-062K05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-383L18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-141E03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-370L15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-364E10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-052G11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-290C21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-361A04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-125G14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-462N09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-426O18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-375C16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-440P14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-269E14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-377K14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-237P06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-306D05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-083C11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-080J01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-103A15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-216P05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-369N24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-166B22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-473I11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-439C15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-425J07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-158K15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-536C01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-144D20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-386A16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-266H11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-463L13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-371A21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-418A03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-411D16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-126J20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-053O18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-201H02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-131A07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-320L18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-147H19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-537L09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-113H05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-374D13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-344M21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-104G11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-288N06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-331H13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-348F14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-512L14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-053A08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-267P02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-124C08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-519B10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-373K20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-540G15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-323G24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-424H19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-311H16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-532O10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-390N12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-491H10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-506L07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-381P24
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-373E12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-480N06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-476A06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-376D12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-130C24
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-506N24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-512L11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-523C01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-387N23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-528F08
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-442A09
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-334D15
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-540D03
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-533F03
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-189P13
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-539E05
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-391F11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-155I22
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-079M03
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-076H05
singlet/doublet	singlet
plural/unique	plural

clone name	B6Ng01-306C09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-252K20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-070K16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-182E22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-052I12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-068D05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-060F12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-200D08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-082D09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-331M03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-103A18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-120E19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-227G11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-263P02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-216M03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-057H12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-249E18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-324E13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-177G12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-148G04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-201J08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-092D24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-110O22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-130I11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-001D03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-075I23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-099C14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-012I05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-204K18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-253E21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-263J12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-278C07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-174J13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-329O04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-283G22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-166O20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-220G08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-203L07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-100P20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-238B14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-081K13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292L04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-305A21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-344I23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-329H12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-131D12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-130C23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-067E01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-312C15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-228H21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-059M04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-113G01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-133H01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-331M02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-079F20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-067I06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-131J11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-157O20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-333E10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-290M16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-298O18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-065C13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-160M11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-263N23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-309M18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-289N19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-197C10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-289N03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-318K23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-089B16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-107I07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-030N03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-334I04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-309A18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-304O20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-044J11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-342M02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-127P09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-263E14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-215P03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122K05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-275O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-133O02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-135B06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-347G21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-219F18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-118K24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-212C02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-042L20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-256K24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-171A12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-282F10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-155L15
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-113H05.T7 (MSMg01no113_h05.b1)	MSMg01-113H05.TJ (MSMg01no113_h05.g1)
ACC	AG325585	AG325586
length	683	684
length of high quality (start - end)	141 (71 - 211)	---
definition	CHROMAT_FILE: MSMg01no113_h05.b1 PHD_FILE: MSMg01no113_h05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:53 2005	CHROMAT_FILE: MSMg01no113_h05.g1 PHD_FILE: MSMg01no113_h05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:53 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	NTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCGG AATTCCAGAAATACTTCATAAGTTTTAAATTGTCTTCCATTCTGAGTATG ATCAAGATGGAAAAAGACTTTATATAATTGTTACTATTTGTTATATTTTA TTTTTCACTGTTCATGTTAAATTATTGGGTTGGGGTGTATCACAGTAATT GAACACTTGTCTTGGATGTAAAAGCTCAGTAGAGAAAAATTAAATACATT TCTATTTTTAACCTCTTTTGGGATCTAATTTCTAAGGTAAACTTTATCAT AGGTACATATAAACAGGGAGAGACATACGATAGATTTTGGTGTTATCGGA AGCTTTGAGCATCCCCTGCTAGCTTGGAGCCCCTGCAAATAAAGGGAACC ACTGTTTCTTGATAACACAATCTGTATTTATAGACTCGAGATAAACTGTT AACGAAAAGATATAATCGTATACTCCAGCTTTGGAACCCAGCACCAAAGA AGATCATGAAACTAAGTGCGGATATCTCAAAAACACTGGCTATAAACACT AAAAATTTTCTGACAACACAGCAACTTAAAGCAATTCAGATAGAAGTAAG TCGCGACCCCATGGTAGTTCAAGTAGCACTATATAGAGCTGCGCCACTCT ATCTCATAAGCCCTCAGAAAGAACTCACCACGA	GGCGATGATGTGGGAGGCCTGGNGGGCGCCCTTTTCAAACATGGAGGNGA ANGANANGATTTCAAAAAAAGGCTTCNGGGAGGGTGTCGTTTTTTTGGAC TTGTAGAGTTTGTTTCTTGCGATTGTATACAAAAATTCAACTTCTTTAAG AGCAGAGGGACAGTTTAAGTTAAGAATTCCACCGGCGAGGAAAGCGTGTT GACTTGAAAAAAGGGAGAGAAACAATAGCAAAGAGAGTAGGAGACTTATT GTGTAGAACGCATAACAAGAGGAGCTTATTATCTTGAAGGGGTGCAGGAT CTGTGGCGAGAGTTTTTTTTCTTATTCGGGAGAGGGGCGGATCCGAGCTT AGTTGTGTTACACGGGGCGCGATTATTGTGTGGTTAGGAGAGAAATGAAG CGGCGAGAAGCCACAAAGAGAGGAGGGTAATATTTGCTAGAAAATGTGGA TAACGACAAAAGAAGGGGAGAACAGATGAAAACAAACAAAGGAGAGAAGA AGGTAGAGGAGAAAAAAAAAAAAAAAAGGGAAGGAAAACAGGACACACAC TCGAACAAACAAACAAAGATAAAAAATAAAAAAAAAATAAAGGGGAAAGG GTGGGGAAAAAGGAAAAAGGGGAAAAGGAAGAAGAAAAATAGAAAAAATA TACATAAAAAAGGCGAAAAGAGGGGAAAAAGTAA
quality values	Open. Hide. 0 3 8 6 6 6 6 9 18 28 27 25 23 25 22 16 19 10 11 11 19 19 37 37 37 19 17 16 10 10 8 15 9 8 8 8 8 8 8 11 23 21 25 20 21 24 37 39 43 28 35 35 35 35 28 26 24 24 24 17 19 8 10 8 8 8 8 15 13 20 19 21 24 28 36 44 43 23 23 9 9 9 27 25 57 37 36 37 37 36 33 43 43 42 42 42 42 32 36 39 42 37 36 36 42 42 35 39 31 36 25 28 31 36 31 37 37 44 44 47 47 48 48 48 48 43 42 35 35 35 37 37 47 57 46 57 44 36 36 29 25 26 35 37 43 44 50 50 50 44 47 47 43 43 43 32 32 26 32 32 37 37 37 37 37 37 37 43 43 43 43 43 43 43 43 32 18 12 12 11 24 24 27 20 24 28 32 32 37 42 42 32 33 29 33 35 35 32 32 43 32 32 20 20 27 32 30 28 16 14 14 18 24 11 13 11 16 11 16 16 32 36 32 32 16 18 11 11 9 18 12 14 15 28 28 41 28 28 28 28 28 28 36 32 27 30 18 18 18 29 24 28 28 28 41 41 43 43 36 34 28 25 25 37 37 48 43 34 32 21 16 18 12 12 12 16 30 25 28 28 31 28 21 28 12 12 11 11 12 23 22 36 36 39 34 37 28 28 17 21 13 17 13 19 13 26 26 37 32 32 21 20 18 24 19 25 15 13 12 12 11 15 11 15 15 23 21 9 9 9 23 17 19 19 24 26 28 28 14 13 14 14 15 24 19 21 15 11 11 11 12 11 11 16 20 16 16 11 11 11 20 20 24 28 28 24 24 15 15 15 11 11 11 12 21 12 12 11 11 11 11 18 18 20 10 9 9 11 12 11 10 8 8 8 8 10 18 16 16 12 9 9 20 15 18 21 12 13 13 15 18 11 9 8 8 8 8 8 15 17 15 13 18 13 13 21 26 24 28 23 28 24 19 12 10 8 8 8 8 11 12 13 15 12 15 9 9 9 9 9 19 8 8 8 8 6 6 7 6 8 10 10 9 11 9 9 9 9 8 8 11 9 12 10 8 8 8 8 15 19 15 12 11 11 12 12 12 11 17 13 15 15 16 13 13 8 8 8 8 8 8 8 10 12 15 9 9 15 15 18 23 24 13 15 10 8 6 8 8 8 8 14 18 23 23 34 21 21 14 14 24 22 28 18 18 10 12 12 11 13 9 9 9 9 10 10 18 22 28 31 26 21 12 12 17 21 34 28 21 15 13 10 9 9 9 10 10 15 15 19 15 8 8 6 6 6 6 15 17 17 13 18 14 14 13 13 10 10 10 9 9 9 10 11 9 8 8 8 8 8 8 8 8 8 8 8 13 13 13 12 9 9 9 7 7 6 8 8 8 11 11 8 8 6 6 6 6 7 8 8 6 6 6 6 8 8 8 8 8 8 8 8 8 10 17 23 23 9 18 18 23 23 23 15 15 11 12 8 8 8 8 13 23 12 8 8 10 12 9 11 11 13 13 13 10 10 10 11 10 8 7 8 8	Open. Hide. 8 8 8 19 19 15 8 8 8 8 7 7 9 8 14 11 18 24 30 21 23 3 0 3 18 18 28 23 19 9 9 9 7 7 6 6 6 6 6 6 6 6 8 6 6 6 3 0 3 10 3 0 3 3 0 3 0 3 9 9 11 11 9 9 9 12 14 8 8 7 6 6 8 10 13 3 0 3 15 18 30 22 18 11 11 11 11 9 9 9 18 18 18 17 14 15 16 18 13 15 16 22 15 9 8 8 10 10 8 11 15 18 20 18 21 12 8 8 8 6 6 8 12 11 12 12 15 15 18 18 18 18 18 18 13 13 10 10 11 13 18 17 28 28 30 24 25 19 17 17 17 17 10 10 8 8 8 10 16 22 14 14 11 11 10 12 10 12 9 9 11 11 12 12 12 12 16 15 14 14 14 12 10 10 10 8 8 10 8 8 10 12 12 11 11 11 11 12 12 12 12 12 14 14 14 15 28 18 18 12 12 12 11 11 11 13 13 18 11 11 10 11 11 12 12 12 9 9 9 9 9 9 10 10 13 10 10 10 10 10 15 15 19 18 18 18 18 21 21 12 15 12 10 10 15 10 13 11 13 15 15 20 23 23 21 17 12 9 9 9 9 9 9 11 12 15 18 24 23 23 28 23 23 23 20 25 18 13 13 12 16 12 12 10 10 10 13 16 19 19 12 12 11 13 10 8 8 6 6 8 10 12 12 12 8 9 9 7 7 6 9 9 23 16 22 13 13 13 12 17 13 13 11 11 13 10 9 9 9 9 9 13 12 12 12 12 9 9 9 12 12 12 12 18 15 12 11 12 11 11 11 10 11 11 12 12 9 9 9 9 9 9 18 24 24 12 8 7 7 6 8 8 10 10 10 12 12 11 11 13 11 11 11 15 11 11 11 11 11 13 14 15 13 13 8 8 8 8 8 8 10 10 11 11 11 11 11 11 12 10 6 6 8 8 8 8 11 11 12 12 12 12 12 10 10 10 10 10 12 11 11 13 11 9 6 6 6 6 8 6 6 8 6 6 6 6 9 10 16 10 11 10 8 8 8 8 8 6 6 8 8 6 6 8 8 9 9 11 11 12 12 12 12 10 10 10 10 10 10 9 10 10 9 8 8 8 8 8 8 8 8 8 8 8 10 11 10 10 12 11 10 10 12 12 15 10 10 10 10 10 10 13 10 10 10 9 9 8 8 8 8 8 9 9 13 10 11 9 7 10 8 12 11 15 11 11 11 11 11 8 8 8 8 8 8 10 9 9 9 10 10 10 10 13 13 13 11 11 11 12 9 11 12 15 8 8 6 6 8 7 8 11 8 8 12 18 11 9 9 10 10 9 10 13 16 11 13 9 9 9 9 8 7 8 9 10 10 21 11 11 8 8 8 8 12 12 11 9 9 11 9 10 10 19 15 14 12 10 10 8 7 7 8 8 8 10 10 8 6 6 6 6 8 10 8 8 8 8 8 8 8 6 6 8 8 9 10 10 11 13 12 8 15 12 8 10 10 10 8 8 8 10 19 15 8 8 15 15 13 8 9 9 9 9

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no113_h05.b1 MSMg01no113_h05.b1 CHROMAT_FILE:
MSMg01no113_h05.b1 PHD_FILE: MSMg01no113_h05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:53 2005
         (141 letters)



>mm_chr6_56331286_56331826
          Length = 541

 Score =  265 bits (137), Expect = 8e-76
 Identities = 140/141 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttttaaattgtcttccattctgagtatgatcaagatggaaaaagactttatataattg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agttttaaattgtcttccattctgagtatgatcaagatggaaaaagactttatataattg 260

                                                                       
Query: 61  ttactatttgttatattttatttttcactgttcatgttaaattattgggttggggtgtat 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 ttactatttgttatattttatttttcactgttcatgtgaaattattgggttggggtgtat 320

                                
Query: 121 cacagtaattgaacacttgtc 141
           |||||||||||||||||||||
Sbjct: 321 cacagtaattgaacacttgtc 341


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 141
Length of database: 541
Length adjustment: 8
Effective length of query: 133
Effective length of database: 533
Effective search space:    70889
Effective search space used:    70889
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information