Query= MSMg01no113_i20.b1 MSMg01no113_i20.b1 CHROMAT_FILE:
MSMg01no113_i20.b1 PHD_FILE: MSMg01no113_i20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:01 2005
(589 letters)
>mm_chr6_93113520_93114511
Length = 992
Score = 949 bits (491), Expect = 0.0
Identities = 545/565 (96%), Gaps = 7/565 (1%)
Strand = Plus / Minus
Query: 5 gaattctcatttgt---cccgacttctcacttctgag-aaaagctgcactcagttttgaa 60
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 596 gaattctcatttgtaaa--cgacttctcacttctgagaaaaagctgcactcagttttgaa 539
Query: 61 cttacatgattcctactgggaggaaagaaggatagttttactaactcaaaagcaggagac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 cttacatgattcctactgggaggaaagaaggatagttttactaactcaaaagcaggagac 479
Query: 121 aagatgagagcttttggctggaaaattgctgggttttatacatacagggcatgtaggagc 180
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 478 aagatgagagcttttggctggaaggttgctgggttttatacatacagggcatgtaggagc 419
Query: 181 tagagatggagaagctgatctagcctcggagacacctctgtagtactagccaagcctaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tagagatggagaagctgatctagcctcggagacacctctgtagtactagccaagcctaaa 359
Query: 241 agaatttctacaatatttg-agaaaatctaataggtaagagggggataggaacacctgca 299
||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||
Sbjct: 358 agaatttctacaatatttgaaaaaaatataataggtaagagggggataggaacacctgca 299
Query: 300 cttaaattggggttgggaagggtctataatgaatcttatttgcttgatgtttaccatttc 359
||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 298 cttaaattggggtagggaagggtctctaacgaatcttatttgcttgatgtttaccatttg 239
Query: 360 aacatttttatttacttagggtggagtgtctgcctgtgtgtgaatatctggaggatcaga 419
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 238 aacatttttatttactgagggtggagtgtctgcctgtgtgtgaatatctggaggaccaga 179
Query: 420 aatcaaccttgggtcttcctctattatgttttacgttactttttgaaacaggatctctca 479
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 178 aatcaaccttgggtcttcctctattatgttttacattactttttgaaacaggatctctca 119
Query: 480 atgaatctggagctcacaaattgactagactggctagccaggagccctcccccactccaa 539
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 118 atgaatctggagctcacaaattgactagactgactagccaggaaccctcccccactccaa 59
Query: 540 aacacacacacacacacacacacac 564
|||||||||||||||||||||||||
Sbjct: 58 aacacacacacacacacacacacac 34
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 992
Length adjustment: 10
Effective length of query: 579
Effective length of database: 982
Effective search space: 568578
Effective search space used: 568578
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no113_i20.g1 MSMg01no113_i20.g1 CHROMAT_FILE:
MSMg01no113_i20.g1 PHD_FILE: MSMg01no113_i20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:01 2005
(498 letters)
>mm_chr6_93025993_93026890
Length = 898
Score = 917 bits (474), Expect = 0.0
Identities = 492/498 (98%)
Strand = Plus / Plus
Query: 1 atgttctgcagctctgtgaaccatggagcagtcaatgcatgttatcctagctctgcacgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 atgttctgcagctctgtgaaccatggagcagtcaatgcatgttatcctagctctgcatgg 260
Query: 61 ggcagcttgattttcctcttcttggtgctgagggaaatgtctttggtggtttgggaaatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcagcttgattttcctcttcttggtgctgagggaaatgtctttggtggtttgggaaatg 320
Query: 121 gccattgactttctcacctgggtaatttcccatcttaagaaagttttgactttcttaata 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccattgactttctcacctgggtaatttcccatcttaagaaagttttgactttcttaatg 380
Query: 181 tatgaggtttttgtctaggtgggagggggagggaatcagacattaccttgggtttactca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatgaggtttttgtctaggtgggagggggagggaatcagacattaccttgggtttactca 440
Query: 241 atccctagatgaagaactaactacctaggtgtgtacatattgtcctaataacttgggtga 300
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 441 atccctagatgaagaactaactacctaggtgtgtacatattgtcctaataacctgggtga 500
Query: 301 ttaattcagggtggtccaagtcagtttgagatcagcctgggtaacatcaacataaaatca 360
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 501 ttaattcagggtggtccaagtcagtttgagatcagcctgggcaacatcaacataaaatca 560
Query: 361 ttgcctagtgtaaagacacaagaattctgctgtgtaatagtgtggagagagcagtaacca 420
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 561 ttacctagtgtaaagacacaagaattctgctgtgtaatagtgtggagagagcagtaagca 620
Query: 421 ctcaggcaagactagaactggccccgggaagagatgactaggcctgagaccacggtatgc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctcaggcaagactagaactggccccgggaagagatgactaggcctgagaccacggtatgc 680
Query: 481 agctctgctatattcatc 498
||||||||||||||||||
Sbjct: 681 agctctgctatattcatc 698
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space: 433344
Effective search space used: 433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
