Query= MSMg01no113_j11.b1 MSMg01no113_j11.b1 CHROMAT_FILE:
MSMg01no113_j11.b1 PHD_FILE: MSMg01no113_j11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:04 2005
(366 letters)
>mm_chr6_39886979_39887745
Length = 767
Score = 656 bits (339), Expect = 0.0
Identities = 357/363 (98%), Gaps = 1/363 (0%)
Strand = Plus / Plus
Query: 5 gaattctcttgtaccacgctatccaacctagcatccttgacccagaataaaagggtagcc 64
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcttggaccaggctatccaacctagcatccttgacccagaataaaagggtagcc 264
Query: 65 acccagatttcctttactcccaatttagttttagctgacattctgtagctcctcattatt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 265 acccagatttcctttactcccaatttagttttagctgacattctgtagctccttaatatt 324
Query: 125 aaccttttattaagttgactcatttttcttcattgaatcttcattagcatgcaataaaat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaccttttattaagttgactcatttttcttcattgaatcttcattagcatgcaataaaat 384
Query: 185 atccatatttcgagtttcttgtttgatgtgtgttgacatttgggtggaattgtcatctca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atccatatttcgagtttcttgtttgatgtgtgttgacatttgggtggaattgtcatctca 444
Query: 245 aacaaaatgaagagactttttgtcacctggctcctcctcttacagttctccatgctccca 304
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 445 aacaaaatgaagagactttttgtcacctggctcctcctctttcagttctccatgctccca 504
Query: 305 aaaccctttactaagtttgtgaatcct-acggtaaggttagttgtacctactcttggtct 363
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 505 aaaccctttactaagtttgtgaatccttacggtaaggttagttgtacctactcttggtct 564
Query: 364 aca 366
|||
Sbjct: 565 aca 567
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 767
Length adjustment: 9
Effective length of query: 357
Effective length of database: 758
Effective search space: 270606
Effective search space used: 270606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no113_j11.g1 MSMg01no113_j11.g1 CHROMAT_FILE:
MSMg01no113_j11.g1 PHD_FILE: MSMg01no113_j11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:04 2005
(357 letters)
>mm_chr6_40048585_40049337
Length = 753
Score = 559 bits (289), Expect = e-163
Identities = 327/343 (95%), Gaps = 8/343 (2%)
Strand = Plus / Minus
Query: 17 gaattcc-aatgaagacttacctcctccctcaacaaggggtggggctgggaaagagatgg 75
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 553 gaattccaaatgaagacttacctcctccctcaacaaggggtggggctgggaaagatatgg 494
Query: 76 caaaatacaagcgagaatttttaaaactcgacaccagaaaaaggggaaaagccagaagac 135
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 caaaatacaagtgagaatttttaaaactcgacaccagaaaaaggggaaaagccagaagac 434
Query: 136 taatctactattcaaattttcttatctcagaccgaagagtgctgtgaggttgtgaggg-g 194
|||||||||||||||||||||||| ||||||||||| |||||||||||| ||| |
Sbjct: 433 taatctactattcaaattttcttagctcagaccgaaaagtgctgtgagg------gggtg 380
Query: 195 cggggcaatgttctatggagaataggggcaagggatgtcttcacacacaacagcctcatc 254
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gggggcaatgttctatggagaataggggcaagggatgtcttcacacacaacagcctcatc 320
Query: 255 ttcttaccacctgacacacactccacaccctcaagggctgagggaccgattgatgattga 314
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 319 ttcttaccacctgacacacactccacaccctcaatggctgagggactgattgatgattga 260
Query: 315 tttttgcacactgaggagaaagtgtcacatgtcacgtgcaagt 357
|||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 259 tttttgcacactgaggagaaagtgtcacatgtcatgtgcaagt 217
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 753
Length adjustment: 9
Effective length of query: 348
Effective length of database: 744
Effective search space: 258912
Effective search space used: 258912
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
