BAC Information

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BAC

Clone NameMSMg01-113J21
Chromosome6 (Build37)
Map Location 36,393,064 - 36,466,875
singlet/doubletdoublet
Overlap genenone
Upstream geneMtpn, LOC100039312, LOC100039327, 9330158H04Rik
Downstream geneChrm2, EG620863, LOC100039370, Ptn, LOC100039514, Dgki, EG665024, Creb3l2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-113J21.T7 (MSMg01no113_j21.b1)MSMg01-113J21.TJ (MSMg01no113_j21.g1)
ACCAG325710AG325711
length698696
length of high quality
(start - end)
371 (328 - 698)626 (71 - 696)
definitionCHROMAT_FILE: MSMg01no113_j21.b1 PHD_FILE: MSMg01no113_j21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:06 2005CHROMAT_FILE: MSMg01no113_j21.g1 PHD_FILE: MSMg01no113_j21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,393,064 - 36,393,433)(36,466,252 - 36,466,875)
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCGTACCGAGGCGCGG
AATTCTTNCAGTTTCTAAAGACGGGTTCATCGTGTCAAAATCATGACAGA
CACCACATGAGAAGGAGAAATTCCCCATACAGCTGTGACTCAGAGTCGCC
ACCCCTAGAGTACAGGCTCATGAAATGGGCCCTGCAGTCACAATTAGTAA
AGTTAAAATGATTCCCTGGTATTCAATGATGCTTATGATTCCTGCAATTC
CTGATCTTCTCAAGTGGAAATCTGCATGTATATATGTATTTGTATATTGC
TTTTTTGAGACAGGGTTTTTCCTCGATTGCCGCCTGTCCTGGAACTCTCT
TGAAGACCAGGCTGGCCTTGAACTCATTGGAATCCACCTGCCTCTGCCTG
CCAAGCACTGGCATTAAAGGAGCGTGCCACTATATCCAACTGATATATCA
GATAGTTGGGTTAATCTCAACTCCTAGCAGAGAATCAAAATTGATTTTTG
CATTTTGATGTTAAGTATAAAGTATTACTTGAATCTCATCGATCAGGGAT
ATGAACCCATAAACATGAGGAAACAAACAAGAAAAAGAAGCAGAGGAGAA
TGCAGGAAAGAAATTCAATAATGGTTGGACCCTGGGTCAAATCTCAGCTT
TCTGCATGTATGACCTTGCTCCAATTATTTATCTCCTGTGAATCTCAG
ATGAAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAACAGCACTCTGAGGAGCATGAGGGCTGTA
GGCTTACGTTTTGCCTGGTTTTTCTCCTTTTGGAGAAAGTGCAACTCCTT
TATAGTAAAATGCATGGGCCTAGAGCTACAGCATGAGACATGTATTACAC
TGAGAACCCCGATCAAACATCCAATCAGAGGCAACCCTGTGAAACAAAAG
AGAAAATGGACCATGGGCCACAGAGCTGCCTGTGATTTCACAGCTGTATC
TGTGTCTTTCTCTCTGTTTTTAAGAAGCAGGAACTGTGTAGCTGGCTTTT
TAAATTTTGTTCTTGTGGTGTTCATTCCCCCAGCCCCTGAAGTTGGCAGG
CTGCTAGTTTAATAGCACTAAATTAGTTAATTCATTGCTGTGAATTAAAA
ATGCGAATCAAATTTGCAGAGGAATTGAGGCTTGTTATAACCCTGATAGA
AAATTCTGGAATGAAAGCTGCTGCTCTCAAGAAGCTGAGCAAAACCAAAC
AGTGTCCCCTATAGGGAGAATTTTCCAGGGTGTATATGCCTTCCATTGGG
AGATGAGGAGAGCATGTGCCACCATGTTACTTTGGGTTGTAGCTGAAGGA
CACACCTGATGGTAGGTAAGAGGGAGCTGCATTTGTGAGTAGTGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no113_j21.b1 MSMg01no113_j21.b1 CHROMAT_FILE:
MSMg01no113_j21.b1 PHD_FILE: MSMg01no113_j21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:06 2005
         (371 letters)



>mm_chr6_36392864_36393634
          Length = 771

 Score =  654 bits (338), Expect = 0.0
 Identities = 362/370 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgccgcctgtcctggaactctcttgaagaccaggctggccttgaactcattggaatccac 60
           ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 tgccgtctgtcctggaactctcttgtagaccaggctggccttgaactcattggaatccac 260

                                                                       
Query: 61  ctgcctctgcctgccaagcactggcattaaaggagcgtgccactatatccaactgatata 120
           |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 ctgcctctgcctgccaagtactggcattataggagcgtgccactatatccaactgatata 320

                                                                       
Query: 121 tcagatagttgggttaatctcaactcctagcagagaatcaaaattgatttttgcattttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcagatagttgggttaatctcaactcctagcagagaatcaaaattgatttttgcattttg 380

                                                                       
Query: 181 atgttaagtataaagtattacttgaatctcatcgatcagggatatgaacccataaacatg 240
           | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 acgttaagtataaagtattacttgaatctcatagatcagggatatgaacccataaacatg 440

                                                                       
Query: 241 aggaaacaaacaagaaaaagaagcagaggagaatgcaggaaagaaattcaataatggttg 300
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 aggaaacaaacaagaaaaagaagcaaaggagaatgcaggaaagaaattcaataatggttg 500

                                                                       
Query: 301 gaccctgggtcaaatctcagctttctgcatgtatgaccttgctccaattatttatctcct 360
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaccctgggtcaaatctcagctttctgcatgtatgaccttgctccaattatttatctcct 560

                     
Query: 361 gtgaatctca 370
           ||||||||||
Sbjct: 561 gtgaatctca 570


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 771
Length adjustment: 9
Effective length of query: 362
Effective length of database: 762
Effective search space:   275844
Effective search space used:   275844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no113_j21.g1 MSMg01no113_j21.g1 CHROMAT_FILE:
MSMg01no113_j21.g1 PHD_FILE: MSMg01no113_j21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:06 2005
         (626 letters)



>mm_chr6_36466052_36467077
          Length = 1026

 Score = 1176 bits (608), Expect = 0.0
 Identities = 620/624 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacagcactctgaggagcatgagggctgtaggcttacgttttgcctggtttttctccttt 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 824 aacagcactctgaggagcatgagggctgtaggcttacgttttgcctgggttttctccttt 765

                                                                       
Query: 61  tggagaaagtgcaactcctttatagtaaaatgcatgggcctagagctacagcatgagaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 tggagaaagtgcaactcctttatagtaaaatgcatgggcctagagctacagcatgagaca 705

                                                                       
Query: 121 tgtattacactgagaaccccgatcaaacatccaatcagaggcaaccctgtgaaacaaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 704 tgtattacactgagaaccccgatcaaacatccaatcagaggcaaccccgtgaaacaaaag 645

                                                                       
Query: 181 agaaaatggaccatgggccacagagctgcctgtgatttcacagctgtatctgtgtctttc 240
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 agaaaatggaccacgggccacagagctgcctgtgatttcacagctgtatctgtgtctttc 585

                                                                       
Query: 241 tctctgtttttaagaagcaggaactgtgtagctggctttttaaattttgttcttgtggtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 tctctgtttttaagaagcaggaactgtgtagctggctttttaaattttgttcttgtggtg 525

                                                                       
Query: 301 ttcattcccccagcccctgaagttggcaggctgctagtttaatagcactaaattagttaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 ttcattcccccagcccctgaagttggcaggctgctagtttaatagcactaaattagttaa 465

                                                                       
Query: 361 ttcattgctgtgaattaaaaatgcgaatcaaatttgcagaggaattgaggcttgttataa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 ttcattgctgtgaattaaaaatgcgaatcaaatttgcagaggaattgaggcttgttataa 405

                                                                       
Query: 421 ccctgatagaaaattctggaatgaaagctgctgctctcaagaagctgagcaaaaccaaac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 ccctgatagaaaattctggaatgaaagctgctgctctcaagaagctgagcaaaaccaaac 345

                                                                       
Query: 481 agtgtcccctatagggagaattttccagggtgtatatgccttccattgggagatgaggag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 agtgtcccctatagggagaattttccagggtgtatatgccttccattgggagatgaggag 285

                                                                       
Query: 541 agcatgtgccaccatgttactttgggttgtagctgaaggacacacctgatggtaggtaag 600
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 284 agcatgtgccaccatgttactttgggttgtagctgaaggacacacctgatgggaggtaag 225

                                   
Query: 601 agggagctgcatttgtgagtagtg 624
           ||||||||||||||||||||||||
Sbjct: 224 agggagctgcatttgtgagtagtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space:   625856
Effective search space used:   625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)