BAC Information

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BAC

Clone NameMSMg01-113N16
Chromosome6 (Build37)
Map Location 148,545,175 - 148,545,619
singlet/doubletsinglet
Overlap genenone
Upstream geneCcdc91, LOC100039712, LOC100039727, LOC100039736, Mlstd1, Ergic2, Tmtc1, 1110033J19Rik
Downstream geneEG622319, LOC100042984, LOC665372, Ipo8, Caprin2, EG665395, Tera, LOC667138, D030011O10Rik, 4833442J19Rik, C730024G19Rik, 2810474O19Rik, LOC665426, LOC622481, LOC665441, Bicd1, LOC667182, LOC100039850
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-113N16.T7 (MSMg01no113_n16.b1)MSMg01-113N16.TJ (MSMg01no113_n16.g1)
ACCAG325884AG325885
length721720
length of high quality
(start - end)
445 (67 - 511)338 (65 - 402)
definitionCHROMAT_FILE: MSMg01no113_n16.b1 PHD_FILE: MSMg01no113_n16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:24 2005CHROMAT_FILE: MSMg01no113_n16.g1 PHD_FILE: MSMg01no113_n16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAATGCGCGGAATTC
CCCAAACTTCCCTTGTTATTTTTTTATTATTTGTGTCTGAATGTGGGTTT
TTATGAGTGCAGCAGTCATGGAGGCCAGGAAAGGGCACGGAACCCCAGGA
CTTGGAGTTACAGATGGTCGTGAGCCACCCAAGTGGGTACTAGGAACCAA
ACTTTGGTCCTCTACAAGAACAACAAGTGTGCCATCTTTCAAGGCCCTTT
TGTAAACAAGCATTTGTGCTAAGGTGGTGTCTGACCACCAGTCATCAACT
TCTTAAGCTGTGAGTCACAATCCTTTAGGGCTCACATAAAACTGAATGTG
GAGGTTGCAAAGCTTTGGCAACAATGTGTTTCTAGCGTGTCCTGCACACT
TGGGATTCATTGATGAGTTCTGAACACACCACACACTAAAAATAGACCCT
ACTGAAACCAGGAAAATGCTTCCCTTTTAGATTTGTTATACATCTCATTT
GGTTAATCATAATTCCCACTCACCCCCACCCCCAAAATTACACTTCTGCA
CTGGCATTCTGGACTCGGGACCCAAAAACAAATCTCCGACGCTAACATCA
TCCAGGCAAAGACTATCGACATTTCTCAGCCTATATAAATGATTATTTAT
GGATCCCCGTAGTCTAATGATCTGTAAAGCAACAACCCAGGGAGAGCAGG
AGGTTATAATCACAAGCCTGC
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTATATATAAGAAGACTACTGATCTTGGCGTCTGAAT
TTTGTATCCTGCCACTTTGCCAAAGTATTTTCTTTTTTCTTTTTATTAGA
TATTTTCTTTATTTACATTTCAAATGTTATTCCCTTACCTGGTTTCCCCT
CTGAAAACTCCCTATCCCTTCTCCCCTCCCCCTGCTCACCAACCTACCCA
CTCCCGCTTCCTGGCCCTGGCATTCCCTTATACTGGGGCATATAACCTTC
ACAGGACCAAAGGTCTCTTCTCCTCTTGATGACTGACAAGGCTATCCTCT
GCTACATATGCAGCTGGAGCCATGGGTCCCACCATGTGCACTCTTTGGTT
GGTGGCCCACTCCCTGGTAGCTCTGGGAGTTCTGGCTGGTTCATATTGTT
GTTCCTCCTATGAGACTGCAAGTCTCTTCAGCTCCTTGGCTCCTTTCTCT
AGCTCCTCTGTTGGTGACCCTATGCTCAGTCAAATGATTGGCTGAAAGCA
TCCACCTCTTGTTTTGTCAGGTCAAGGCTACGTATATAACGCATTTATCC
AAGCCCCTTGCCTCCTCTCTTAAGCAATTTCCGTGCTCGGCCCACAAGTA
TGCGCACAGTTTTGTATTTCCTTACCCCACTTCCCAATGGGTTTAAAACC
TAAAACCTTGTGCATTTCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no113_n16.b1 MSMg01no113_n16.b1 CHROMAT_FILE:
MSMg01no113_n16.b1 PHD_FILE: MSMg01no113_n16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:24 2005
         (445 letters)



>mm_chr6_148544975_148545819
          Length = 845

 Score =  837 bits (433), Expect = 0.0
 Identities = 442/445 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatttttttattatttgtgtctgaatgtgggtttttatgagtgcagcagtcatggaggcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatttttttattatttgtgtctgaatgtgggtttttatgagtgcagcagtcatggaggcc 260

                                                                       
Query: 61  aggaaagggcacggaaccccaggacttggagttacagatggtcgtgagccacccaagtgg 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 aggaaagggcacggaaccccaggacttggagttacagatggttgtgagccacccaagtgg 320

                                                                       
Query: 121 gtactaggaaccaaactttggtcctctacaagaacaacaagtgtgccatctttcaaggcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtactaggaaccaaactttggtcctctacaagaacaacaagtgtgccatctttcaaggcc 380

                                                                       
Query: 181 cttttgtaaacaagcatttgtgctaaggtggtgtctgaccaccagtcatcaacttcttaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttttgtaaacaagcatttgtgctaaggtggtgtctgaccaccagtcatcaacttcttaa 440

                                                                       
Query: 241 gctgtgagtcacaatcctttagggctcacataaaactgaatgtggaggttgcaaagcttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctgtgagtcacaatcctttagggctcacataaaactgaatgtggaggttgcaaagcttt 500

                                                                       
Query: 301 ggcaacaatgtgtttctagcgtgtcctgcacacttgggattcattgatgagttctgaaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggcaacaatgtgtttctagcgtgtcctgcacacttgggattcattgatgagttctgaaca 560

                                                                       
Query: 361 caccacacactaaaaatagaccctactgaaaccaggaaaatgcttcccttttagatttgt 420
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 561 caccacacactaaaaatagaccctaatgaaaccaggaaaatgcttcccttttagatttgt 620

                                    
Query: 421 tatacatctcatttggttaatcata 445
           |||| ||||||||||||||||||||
Sbjct: 621 tatatatctcatttggttaatcata 645


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 845
Length adjustment: 10
Effective length of query: 435
Effective length of database: 835
Effective search space:   363225
Effective search space used:   363225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)