Query= MSMg01no114_b16.b1 MSMg01no114_b16.b1 CHROMAT_FILE:
MSMg01no114_b16.b1 PHD_FILE: MSMg01no114_b16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:43 2005
(511 letters)
>mm_chr6_77640111_77641018
Length = 908
Score = 820 bits (424), Expect = 0.0
Identities = 477/508 (93%), Gaps = 22/508 (4%)
Strand = Plus / Minus
Query: 4 ggaattctgtaaacgttatcacttgattcctcctcctctgtctctcctgctgtcaatctt 63
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 ggaattctgtaaatgatatcacttgattcctcctcctctgtctctcctgctgtcaatctt 521
Query: 64 ccacatatctgttcatttgcctcagaaacatgcctctattccttgtttcagtggccactg 123
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 520 ccacatatctgttcatttgcctcagaaatatgcctctattccttgtttcagtggccactg 461
Query: 124 tcatatttcctgatctgaaaccctgcttctgttctacgagtttgtgatagacttttctcc 183
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 tcatatttcctggtctgaaaccctgcttctgttctacgagtttgtgatagacttttctcc 401
Query: 184 atctttatccatatactctgacccctgtagactcttctcctctgcagtaggtaggatatt 243
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 400 atctttatccatatactctgacccctgtagactctt---ctctgcagtaggtaggatatt 344
Query: 244 cctaaggtataggccttattacctggcccagggtgaaaacactagaggtagaggtggttc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 cctaaggtataggccttattacctggcccagggtgaaaacactagaggtagaggtggttc 284
Query: 304 ttggttctcttagaataaggccatgtgtgacctgtcacctcttgctaccactcactcaac 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 ttggttctcttagaataaggccatgtgtgacctgtcacctcttgctaccactcactcaac 224
Query: 364 aggatctcattcagatcatgatttcagaaaatatccatgccagacttaacaggatgcttc 423
|||||||||||||||| |||||||||||||||||||||||||
Sbjct: 223 aggatctcattcagat-------------------catgccagacttaacaggatgcttc 183
Query: 424 ttgccatgtgctggtcttttgctggctcttgtcttccctttcttataaataaattgccac 483
|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 182 ttgccacatgctggtcttttgctggctcttgtcttccctttcttataaatacattgccac 123
Query: 484 ttcctcttataagcatcccttaacagat 511
||||||||||||| |||||||||||||
Sbjct: 122 ttcctcttataagtgtcccttaacagat 95
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 908
Length adjustment: 10
Effective length of query: 501
Effective length of database: 898
Effective search space: 449898
Effective search space used: 449898
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no114_b16.g1 MSMg01no114_b16.g1 CHROMAT_FILE:
MSMg01no114_b16.g1 PHD_FILE: MSMg01no114_b16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:43 2005
(496 letters)
>mm_chr6_77501047_77501943
Length = 897
Score = 876 bits (453), Expect = 0.0
Identities = 486/497 (97%), Gaps = 1/497 (0%)
Strand = Plus / Plus
Query: 1 tagtggatgaaaggacactccactcttcaccccttctctcataaagtgcttcataaggta 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagtggatgaaaggacagtccactcttcaccccttctctcataaagtgcttcataaggta 260
Query: 61 gctcattcaggaacaaatgaatatcattgacagtcctggaatttcaaaagagacatcttt 120
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct: 261 gctcattcaggaacaaatgaatatcactgacagtccttgaatttcaaaagagacatcttt 320
Query: 121 agggtgattggct-aaaaaaaaaatagccatgagggagagtacgctgaatttattcttcc 179
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 agggtgattggctcaaaaaaaaaatagccatgagggagagtaggctgaatttattcttcc 380
Query: 180 tccaaatattaagctctaacctcatgtaactaactaataaacacatgtccttattgctca 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccaaatattaagctctaacctcatgtaactaactaataaacacatgtccttattgctca 440
Query: 240 catacattattgttttgttcatttagtggtttgaactggttataacatttattggtggtg 299
||||||||||||||||||||| |||| ||||||| ||||||||||||||| |||||||||
Sbjct: 441 catacattattgttttgttcacttaggggtttgatctggttataacatttgttggtggtg 500
Query: 300 ttctagaaagctcatataatatagccattattaaggtctctgaggtctatggtctacatg 359
| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 501 tcctagaaagctcatataatatagccattattaaggtctctgaggtctgtggtctacatg 560
Query: 360 tacagtcagagttgtcaattgtcaggtacagtgaccacaggcaaactgcctaacctccat 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tacagtcagagttgtcaattgtcaggtacagtgaccacaggcaaactgcctaacctccat 620
Query: 420 ggtctgttcccaccagtggcacgggaataatcacagaccacactccagggctattcagtc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggtctgttcccaccagtggcacgggaataatcacagaccacactccagggctattcagtc 680
Query: 480 taaatttgattattctc 496
|||||||||||||||||
Sbjct: 681 taaatttgattattctc 697
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 897
Length adjustment: 10
Effective length of query: 486
Effective length of database: 887
Effective search space: 431082
Effective search space used: 431082
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
