Query= MSMg01no114_c03.b1 MSMg01no114_c03.b1 CHROMAT_FILE:
MSMg01no114_c03.b1 PHD_FILE: MSMg01no114_c03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:45 2005
(254 letters)
>mm_chr6_128377320_128377973
Length = 654
Score = 379 bits (196), Expect = e-110
Identities = 244/280 (87%), Gaps = 33/280 (11%)
Strand = Plus / Plus
Query: 5 gaattccaggacagccacgggctacacagagaagccccgtcttaaaaaaaaaaaaaaaaa 64
||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||
Sbjct: 178 gaattccaggacagcca-gggctacacagagaaaccccgtctt--aaaaaaaaaaaaaaa 234
Query: 65 aaagaaaggaaggagggagggagggagg------------------------------ga 94
|||||||||||||||||||||||||||| ||
Sbjct: 235 aaagaaaggaaggagggagggagggagggagagagagagagagagagagagagagagaga 294
Query: 95 gagagagagagagagagaaagaaagaaaaaattttctctagttcttagtgttgttgctgt 154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 gagagagagagagagagaaagaaagaaaaaattttctctagttcttagtgttgttgctgt 354
Query: 155 acacacaactcatctgcaggtaccttgaagtatgtactcaagtaagcatggtaagtggca 214
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 355 acacacaactcatctgcaggtaccttgaagtatgtactcaagtaggcatggtaagtggca 414
Query: 215 tcagaccttgcaggctttgtgagataatgtgtttacgtgg 254
|||||||||||||||||||||||| |||||||||||||||
Sbjct: 415 tcagaccttgcaggctttgtgagacaatgtgtttacgtgg 454
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 654
Length adjustment: 9
Effective length of query: 245
Effective length of database: 645
Effective search space: 158025
Effective search space used: 158025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no114_c03.g1 MSMg01no114_c03.g1 CHROMAT_FILE:
MSMg01no114_c03.g1 PHD_FILE: MSMg01no114_c03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:45 2005
(536 letters)
>mm_chr6_128456482_128457417
Length = 936
Score = 783 bits (405), Expect = 0.0
Identities = 486/527 (92%), Gaps = 30/527 (5%)
Strand = Plus / Minus
Query: 1 ttaaaatattctaaaaactgttatgatatgaaattaagaatccactccaaatccacaatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ttaaaatattctaaaaactgttatgatatgaaattaagaatccactccaaatccacaatc 438
Query: 61 ctgaatcttctttattttccagtgaaaggagtcttttccctcccaattcaagtggagcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ctgaatcttctttattttccagtgaaaggagtcttttccctcccaattcaagtggagcca 378
Query: 121 ggcatggctcccgaggctcagctgctcgtttatgctattttacctaatgaagaacttgtc 180
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 377 ggcatggctcccgaggctcagctgctcatttatgctattttacctaatgaagaacttgtc 318
Query: 181 gctgatgctcagaattttgaaatcgagaagtgttttgccaacaaggtgggtgtttgtgtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gctgatgctcagaattttgaaatcgagaagtgttttgccaacaaggtgggtgtttgtgtc 258
Query: 241 taagcctgatccttttattctctcctttatatgcgtgggcaataaagaagtactatctct 300
||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
Sbjct: 257 taagcctgatccttttattctctcctttatatgtgtgagcaataaagaagtactatctat 198
Query: 301 ttctttctttctttctttctttctctttctctctctctttctttctctttctctctttct 360
|||| |||||||||||| |||| |||| | ||||||||||| |||| |||||||
Sbjct: 197 ttct--ctttctttcttt--ttct--ttct-t---tctttctttct--ttctttctttct 150
Query: 361 ctctttctctctttctctctttctctctttctctctttctctctttctctctttctctct 420
|||||||| |||||||| |||||| ||||||| ||||||| ||||||| |||
Sbjct: 149 ctctttct----ttctctct------ctttctttctttctttctttctttctttctttct 100
Query: 421 ttctctctttctctctttctctctttccttctttctttctctctatgtagcactggctgt 480
|||| ||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 99 ttctttctttctttctttct--------ttctttctttctctctatgtagcactggctgt 48
Query: 481 ccaggaacttaatattgaccaggttggtctagaactcacagagatcc 527
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47 ccaggaacttaatattgaccaggttggtctagaactcacagagatcc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 78
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space: 487076
Effective search space used: 487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
