BAC Information

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BAC

Clone NameMSMg01-114D20
Chromosome6 (Build37)
Map Location 41,808,441 - 41,809,024
singlet/doubletsinglet
Overlap genenone
Upstream geneEG638904, Moxd2, LOC621968, BC048599, 1700074P13Rik, LOC194360, 1810009J06Rik, LOC100040208, 2210010C04Rik, LOC100039790, Tcrb-V8.2, LOC100040359, LOC100040333, Try4, 1810049H19Rik, Try10, Prss3, EG436523, EG386551, LOC100040233, Prss1, Prss2, Tcrb-V13, Ephb6, Trpv6, Trpv5, 1700034O15Rik, Kel, Olfr459, Pip
Downstream geneSval2, Sval1, Sval3, Sva, Tas2r139, Tas2r144, Gstk1, Tmem139, Casp2, Clcn1, 6330503C03Rik, Zyx, Epha1, Tas2r143, Tas2r135, Tas2r126, Olfr458, Olfr457, Olfr456, LOC232745, EG546896, Eapa2, BC011487, 3321401G04Rik, LOC100039918, GA_x5J8B7W6337-801345-802245, Olfr453, Olfr38, Olfr452, Olfr451-ps1, Olfr450, Olfr449
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-114D20.T7 (MSMg01no114_d20.b1)MSMg01-114D20.TJ (MSMg01no114_d20.g1)
ACCAG326170AG326171
length7201,389
length of high quality
(start - end)		593 (40 - 632)---
definitionCHROMAT_FILE: MSMg01no114_d20.b1 PHD_FILE: MSMg01no114_d20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:53 2005CHROMAT_FILE: MSMg01no114_d20.g1 PHD_FILE: MSMg01no114_d20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
TTGTGTATTTCATTGATTCCTTATAATTTTTGAAGTTTCTATTGCATGAA
GTTCAAAAAAAAAATGGAAGAAATATGACCAGGACAAACAGGTCATTGCT
CAGTGACTGAGTCGTAGGAGACAGTACCAGGAGATTAGAAGATAAAAAGG
ATAAAAGATAGAAAAGATAAGAAAATTTAGGATCAGGATGTCTTCTAAAA
GACACATCTTTTGCCAACCAACTTTATTATGAAGTACATTTTCTTATATA
CTCTTTTTTGGGTTAGAAATGGGATGAAATTAGTAGAACCTATCATATGT
TGTCTGGAAAATAGCAAGAAGCTAATAAAAACCTGTTGCATGAAGGGAAC
ACTGTTTCTTCAGAACATCACAGGCTGGGCACACAGCATCCTGGGAACTG
ATAGTCATATCCCCATACTCAGTGAAGATTTGGGTTCTCAGCATGTCTAG
ATATACATCAAGGCCTCTGGGGAAAACTCCCAAAGCCATGGATTCAGGCT
ATTTTGGCTCTACCAAGCGTGTTCCTGGTTTTAAGAAGGAGCTATGTTAT
TTCTCTATGCATTGGGGCCTCAGAGAAAAAGACAGTTGATCAAACAAGCT
TTCGACAGAGGATAAGATATGGTAACTGAAACATAATCAAAGTGTGTTAC
ATATGTGCCATGGAAAGCCC

CATTATCTTCCTTACCCTTTTAACGTCACCAGACACTTTAAACCGACGCC
NNCCCGCCTAATGTATACCCGTACATGGCTATCCGCAAACGACGCGGTAT
TACCTCGACACCCGCCCGTGATCTCGCAGCGGCACATAACCGCTGCGGCG
CTTCCTTGTCGACGCACCGGATCTAGCGCGTTATTGGCTATATTAATATT
TGTCCCCCATTTCGCACTGTCGAATCTAGGATACAGCGTGCGGCGGCTAT
AGATATGGGTGAGAGATAATACACACGGCGACGACGCGGCGTCCGCAACC
GGTAGTCGACAACCGTTGTTNCGCGCCACAGACAATGGATTCGCCGGTTA
GATAACCGCCTCTTCAGCTCTACTCAGCGGCTAACCGCCGATAAATATCG
TGGCGTTATATACTCCGCAGTTAAGCGCCTAATATACGCTGCCCGCCAAT
AATGCCTGAATAACTGCGGCGAAGCGAAGTCTCGTGGGCACGAACGGCAG
GGAGCGCGTTCGCCAATATCGCGACAGCAACCCGCGCATCGCTATTATCC
GGGCGGTCGGATATCGCGACCGCCCCACGGAGCGGTAAGCGCCAAGAAGG
TGTATTTTAAGCGTTATCCCGGTGCTATTAAGACCCGTCTTTATCGTATT
GCGCTTATACGCGCCGCGCGCGACATGACCGTCGTATTCGCCCCGCCCCA
TCTACTTATATCTCGCCCCGCCCTTCCTCTTATATAATTACAGCGCTATC
CTCGCTCGCGTATAATCCAGAATTCCGCGCGCCGGCCGGCGTCGTTATTA
GTCGGCTGATACCCGCATCGCCGCTATTATTCGTCACCCTGTCTCTTCTC
GCCCGCGCTTCAAATTAATACCTGTACCGCGGTCTGATACGTGAAGCGTC
CCGCGAGCCATAACGTCGACATTTCGAATACTATACCCGGCGGGCGCGCA
AATATATGTTAACATTATACACTCGGCTCGCGTCGCCATTAGTACACATA
TTATACATCATAAGCGCGCGTGCACGGATGGCTGCGCATGATTATACACA
GTCGTGCGGTGTGCTAGCAGATATATCCTACGACCGGCGCTGAATACAAC
TACCTCGTGTCACATATGCGCANCACTACCTTCGAGTCTACGNTGTGATG
ACCGCGCACACACGTACCTCGCGATATACACGAGTGCNGTTGGTTAGACA
TCCACGTATNGCGGCTATGCGGTCGACAGACGATGACATGAGTCGCACGC
GACGTAGACAATGGTATATGAGCGTCCNAGCGTGAGANTNATTACGACGC
GATCGACGTGCATCTCAAAACTTTACGCGCCCCCGAGCCGTGCACGCAGA
TAATTAGCGTCGNCGCGACGCGCTCTGTATTATTATATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no114_d20.b1 MSMg01no114_d20.b1 CHROMAT_FILE:
MSMg01no114_d20.b1 PHD_FILE: MSMg01no114_d20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:53 2005
         (593 letters)



>mm_chr6_41808237_41809224
          Length = 988

 Score =  944 bits (488), Expect = 0.0
 Identities = 563/590 (95%), Gaps = 7/590 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcattgtgtatttcattgattccttataatttttgaagtttctattgcatgaagtt 64
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct: 788 gaattcattgtgtatttcattgattccttataacttttgaagtttctattgcatggagtt 729

                                                                       
Query: 65  caaaaaaaaaatggaagaaatatgaccaggacaaacaggtcattgctcagtgactgagtc 124
           |    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 c----aaaaaattgaagaaatatgaccaggacaaacaggtcattgctcagtgactgagtc 673

                                                                       
Query: 125 gtaggagacagtaccaggagattagaagataaaaaggataaaagatagaaaagataagaa 184
            |||||||||||||||||| || | ||||||||||||||||||||||||||| |||||||
Sbjct: 672 ttaggagacagtaccaggatatcataagataaaaaggataaaagatagaaaacataagaa 613

                                                                       
Query: 185 aatttaggatcaggatgtcttctaaaagacacatcttttgccaaccaactttattatgaa 244
           || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 aagttaggatcaggaggtcttctaaaagacacatcttttgccaaccaactttattatgaa 553

                                                                       
Query: 245 gtacattttcttatatactcttttttgggttagaaatgggatgaaattagtagaacctat 304
           || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 552 gtgcattttcttatatactc-tttttgggttagaaatgggatgaaattagtagaacctat 494

                                                                       
Query: 305 catatgttgtctggaaaatagcaagaagctaataaaaacctgttgcatgaag-ggaacac 363
           |||||||| |||||||||||||||||||||| ||||||||||||||||| || |||||||
Sbjct: 493 catatgttatctggaaaatagcaagaagctagtaaaaacctgttgcatg-agaggaacac 435

                                                                       
Query: 364 tgtttcttcagaacatcacaggctgggcacacagcatcctgggaactgatagtcatatcc 423
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 434 tgtttcttcagaacatcacaggctgggcacagagcatcctgggaactgatagtcatatcc 375

                                                                       
Query: 424 ccatactcagtgaagatttgggttctcagcatgtctagatatacatcaaggcctctgggg 483
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 374 ccatactcagtgaagatttgggttctcagcatctctagatatacatcaaggcctctgggg 315

                                                                       
Query: 484 aaaactcccaaagccatggattcaggctattttggctctaccaagcgtgttcctggtttt 543
           ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 314 aaaactcccaaagccatggattcagtctattttggctctaccaagcatgttcctggtttt 255

                                                             
Query: 544 aagaaggagctatgttatttctctatgcattggggcctcagagaaaaaga 593
           ||||||||| ||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 254 aagaaggagttatgtcatttctctatgcattggggactcagagaaaaaga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 988
Length adjustment: 10
Effective length of query: 583
Effective length of database: 978
Effective search space:   570174
Effective search space used:   570174
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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