BAC Information

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BAC

Clone NameMSMg01-114F09
Chromosome6 (Build37)
Map Location 65,122,026 - 65,122,274
singlet/doubletsinglet
Overlap genenone
Upstream geneGrid2, Atoh1, LOC100041833, LOC667115, Smarcad1, Ptgds2, LOC100042741, LOC100041858
Downstream geneLOC634745, EG667141, C130060K24Rik, 9030611K07Rik, A930038C07Rik, LOC667160, Prdm5, 4930544G11Rik, Ppia-ps6_651.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-114F09.T7 (MSMg01no114_f09.b1)MSMg01-114F09.TJ (MSMg01no114_f09.g1)
ACCAG326241AG326242
length701725
length of high quality
(start - end)
249 (70 - 318)411 (75 - 485)
definitionCHROMAT_FILE: MSMg01no114_f09.b1 PHD_FILE: MSMg01no114_f09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:00 2005CHROMAT_FILE: MSMg01no114_f09.g1 PHD_FILE: MSMg01no114_f09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATCXXXXXXXXXXXXXXXXXXXXXXXXXCTAATTCGAACCAACCGCGGA
ATTCAGGAAATTACCTAAATAAATTTTAGGTCCAGTTGGAATGTTAAAAA
GCCTGCAGATCTTCTGTGCTTCCTTATAGCCTGTCTCACTTGGACCTGAA
GCTACGTGCATGAAATGGAGAGCGCTGAATTGAGTCTGATGGCATGTTCT
GTGTGGATATGCAGCTTGCAATCAAATCCAGCAACATGCTAAACAGATCG
TGAACCACAATCAACCTTATTTTATCTCAGGAATACAAAGGTTGTTCAGT
ATATATAAATCAATAATTGTTTTTATAGTATAAAAATTAGAATAAAGAAT
TAAATCATATTATTTTTTCCGCACCTCGCCAAAAAGTATAACAAAATCTG
GATTTTCTTAAATGAAAAATAAAAACCTGAACATATTAGGAACATAAGTA
TCACACCACAATATAAAAAAGAGAATGTGAAACATACCCACAGCCAACAT
TACACTGAATGGGGAAAATTTGAAAGCATTTCCTCTGAGATCAAGAACAG
AATACATGTGTTGACTCCCACTACTCTTATTCAATGTAATACTTGAACTA
TTATCTAGAATATTGTTTTAGTCAGGATTTCTATTCCTGCACAAATATCA
TGACCAAGAAGCAATTGGGGAGGAAGGGGTTTATTCGGCTTACACTTTTC
T
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTGTTTAGATCTGTAGCCCATTTTT
AATTGGGTTATTTGGGTTGTTGGTGTCTAACTTCTTTTTTTGTTTTTGTT
TTTTCTACACAGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCTTGGAA
CTCACTTTGTAGACCAGGCTGGCCTCAAACTCAGAAATCTGCCATACAGA
AGCTTTTCTGTTTCTAGATGTTTCCCTTTTATCAGTTGTTGATCTTAGAG
CCTGAACCATTGGTGTTCTGTTCAGGAAATTGTCTCCTGCACCAATATAT
TGAAGGGTATTTTCTACTTTCTCTTGTATGATGTTTAGTGTATTTGGTTT
TATATTGAGGTCTTTCATCCACTTGGACGTGAGTTTTTTTTAATTTAATT
TTTTTTTTAAGATTTGTTTATTATTACATGTAAGCACATTATAACTGTCT
TCAGACACACCATAAAAGGGCATCAGATCTCATTACGGATGGTTGTGAGC
TACCATTTGCTTGCAGAGATTTGAACTCAGGACCTCCATAAAACCAGCCC
GTGCTCTTAACTGCTGAGCCACCTCTCCTAGCCCCTGGACTTGACCTTTG
CGTACCGCGACAAACATGGACCTATTTGCATTCTTCCACCCGTATACCTC
TCGCTATACCTATTACCGTTTCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no114_f09.b1 MSMg01no114_f09.b1 CHROMAT_FILE:
MSMg01no114_f09.b1 PHD_FILE: MSMg01no114_f09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:00 2005
         (249 letters)



>mm_chr6_65121925_65122573
          Length = 649

 Score =  466 bits (241), Expect = e-136
 Identities = 247/249 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   taaattttaggtccagttggaatgttaaaaagcctgcagatcttctgtgcttccttatag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 taaattttaggtccagttggaatgttaaaaagcctgcagatcttctgtgcttccttatag 291

                                                                       
Query: 61  cctgtctcacttggacctgaagctacgtgcatgaaatggagagcgctgaattgagtctga 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 290 cctgtctcacttggacctgaagctacgtgcatgaaatggagagcactgaattgagtctga 231

                                                                       
Query: 121 tggcatgttctgtgtggatatgcagcttgcaatcaaatccagcaacatgctaaacagatc 180
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 tggcatgttctatgtggatatgcagcttgcaatcaaatccagcaacatgctaaacagatc 171

                                                                       
Query: 181 gtgaaccacaatcaaccttattttatctcaggaatacaaaggttgttcagtatatataaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 gtgaaccacaatcaaccttattttatctcaggaatacaaaggttgttcagtatatataaa 111

                    
Query: 241 tcaataatt 249
           |||||||||
Sbjct: 110 tcaataatt 102


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)