BAC Information

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BAC

Clone NameMSMg01-114J06
Chromosome6 (Build37)
Map Location 41,650,618 - 41,651,077
singlet/doubletsinglet
Overlap geneKel
Upstream geneMgam, EG638904, Moxd2, LOC621968, BC048599, 1700074P13Rik, LOC194360, 1810009J06Rik, LOC100040208, 2210010C04Rik, LOC100039790, Tcrb-V8.2, LOC100040359, LOC100040333, Try4, 1810049H19Rik, Try10, Prss3, EG436523, EG386551, LOC100040233, Prss1, Prss2, Tcrb-V13, Ephb6, Trpv6, Trpv5, 1700034O15Rik
Downstream geneOlfr459, Pip, Sval2, Sval1, Sval3, Sva, Tas2r139, Tas2r144, Gstk1, Tmem139, Casp2, Clcn1, 6330503C03Rik, Zyx, Epha1, Tas2r143, Tas2r135, Tas2r126, Olfr458, Olfr457, Olfr456, LOC232745, EG546896, Eapa2, BC011487, 3321401G04Rik, LOC100039918
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-114J06.T7 (MSMg01no114_j06.b1)MSMg01-114J06.TJ (MSMg01no114_j06.g1)
ACCAG326423AG326424
length741728
length of high quality
(start - end)
---460 (77 - 536)
definitionCHROMAT_FILE: MSMg01no114_j06.b1 PHD_FILE: MSMg01no114_j06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:17 2005CHROMAT_FILE: MSMg01no114_j06.g1 PHD_FILE: MSMg01no114_j06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGGGGATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTCTTTTCTTCTGCTGGACAACAGTCAGGTCGTTTTCGT
TTTCGTTTTCGTTTTCGTTTTCGTTTTCGTTTTCGTTTTGTTTTCGTTCG
CTTTTTCGTTTCGTTTGTTTGCCCTTACAACCNCCTTCACTTCACCCTTN
NCCCCCACCCCCAACCACCCCGGTTCAACGGTCCCCTGTTACAAAAGTTC
CCCGGCCCAATTCACATGCCCAAACGGCACAACACACCGGCCAAAACCCC
ATTTCACCTTACCCCCCATTCCCCCCCCACCCACATACACCACCCTTAAC
CCCTCCCTTTGCTCACCCCCCCCTTGTACCCCTTTTCCCCCCCTGAACCC
CCCGCCCCCCCGGTGCTCACCTGNTATACCACCTGTTTGGTGCCCCCCCC
CCAGTTCACAATGNTCACCCACGGGGCCCACGGACAAAACAAAAAAGGAC
CAAAATACCGCCAAAAGCAACACGGGCTATGCAAAAAAACGGGACCGTCC
CCAACAAAAAACAAAGCGCCGGCCAAATGGGCGATCACTAAACAACACGG
GGCCAACAAAGGACACCCACCGGGGTCAAAAAAACACACACTGGCATAAA
ACACCGCCACAAAAAAGGTGCACCCCAAACATCGGGGACAAAACCCCCAC
ACTCCACANTCCCCCCACTTCTCCACCCCCCGGGCCACACC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCACATCTTTGTACAGAATAATTAA
TCCAGAAGACATGGCCATCAGTATGTGGTATTCTAAGATTCGGCTTTAAC
ATGTGCATTCATAAATTTAACTATTATGGTTTGGTAGGATTAACTAAAAT
CTGAAGTGGTTAAGGACAAATTTAGATAGGAAGCCATCAATGCAGCTTTG
GGACATGGCTAATTATACAGGTGACAAAATGAAACTAAAAGACACCATAA
AGGGGTTACAGGGAAATTCTGAGTTAAGGAGAATACTTGGAATGTTGTGG
CCTAGGCACACGATCAGTGAGAAGCTGGCCTGGACTTTGAATGGGAAGAA
AAGTGGGAAGGAAAATATGACACTGGGCTTGGTGATTATTGGCCCAGAAA
GTCAAGAAGAATTAGTAAATATTACCATATAGAAAAAGAGAGGAGCTACT
GAAGCCTTTCAGATATTACCATGGATCTATGTAGAATTCAAGTGGAATCA
GTTCTGGAGGCAAGTTGAAGCAGCTGTTAACATATTTAATCTAAGTTAAC
GTATTTGAACTTGATGCATAATAGCCAATGGAAAATGAGCCGAGCGTGAG
AATATGGTCAGTTTAAACACATTGTTGATGGTCCCAGAGACTTTCCAAGG
TTTCTGTAGTTAACAATAACTAATGGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no114_j06.g1 MSMg01no114_j06.g1 CHROMAT_FILE:
MSMg01no114_j06.g1 PHD_FILE: MSMg01no114_j06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:18 2005
         (460 letters)



>mm_chr6_41650418_41651277
          Length = 860

 Score =  851 bits (440), Expect = 0.0
 Identities = 455/460 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacatctttgtacagaataattaatccagaagacatggccatcagtatgtggtattctaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 cacatctttgtacagaataattaatccagaagacatggccatcagtatgtggtattctaa 601

                                                                       
Query: 61  gattcggctttaacatgtgcattcataaatttaactattatggtttggtaggattaacta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 gattcggctttaacatgtgcattcataaatttaactattatggtttggtaggattaacta 541

                                                                       
Query: 121 aaatctgaagtggttaaggacaaatttagataggaagccatcaatgcagctttgggacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 aaatctgaagtggttaaggacaaatttagataggaagccatcaatgcagctttgggacat 481

                                                                       
Query: 181 ggctaattatacaggtgacaaaatgaaactaaaagacaccataaaggggttacagggaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 ggctaattatacaggtgacaaaatgaaactaaaagacaccataaaggggttacagggaaa 421

                                                                       
Query: 241 ttctgagttaaggagaatacttggaatgttgtggcctaggcacacgatcagtgagaagct 300
           ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 420 ttctgagttaaggagaacacttggaatgttgtggcctcggcacacgatcagtgagaagct 361

                                                                       
Query: 301 ggcctggactttgaatgggaagaaaagtgggaaggaaaatatgacactgggcttggtgat 360
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 360 ggcctggactttgaatgggaagaaaagtgggaaggaaaatatgagactgggcttggtgat 301

                                                                       
Query: 361 tattggcccagaaagtcaagaagaattagtaaatattaccatatagaaaaagagaggagc 420
           ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 300 tattggcccagaaagtcaagaagaattggtaaatattaacatatagaaaaagagaggagc 241

                                                   
Query: 421 tactgaagcctttcagatattaccatggatctatgtagaa 460
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 tactgaagcctttcagatattaccatggatctatgtagaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 860
Length adjustment: 10
Effective length of query: 450
Effective length of database: 850
Effective search space:   382500
Effective search space used:   382500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)