CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATCTGATGTACTTAAAGAAGACCTAAGCCATCACTGGAAAGAGAGG
CCCATTGGGCACGCAAACTTTATATGCCCCAGTACAGGGGAACAGCAGGG
CCAAAAAGTGGGAATGGGTGGGTAGGGGAGTTGGCCTTCTCNCCTCCCCN
TCCCCCTTCTCTTCTCCCTCTCTTTCCCCCCCTTCCTCTCTCTCCTTTTT
CTTCCTTCTTCCCCTTCCCCCCTCTTCCCCCCTTCCCCCTTTTCTTCCTT
TCCTCCCCTCTTTCCTTTTTCCCCTTTCCTTTTTTTTCCTCCTCTCCCTT
CCCTCTTTTTCCCTCCTCCTCTTTTTTTTTTTTTCCCCCCCCCCCCCCCC
CCCCTTCTCCCTTCTCCATTTTTCCCTTCTTCCCTCTCCCCCCCCCCCTT
CTCTCTTTTTTTTTCTCCCCCCCGCCGCCCCTTCTCCCTTCCCCCCCCTT
CCCCCCTTCCCCCCCCCCTTTTCTTTCCTTTCCCCCCCCCCCTCTTCCTC
CTTCCCCTCTTTTTTCTCCCCCCTCTTTTTCCCCCGCTCCCCCCCCCCTT
CTCCCCGCCCCCCTATCCCCCATCCCTCTTTCTCCCCCCCCTTTCTTCCT
CCCATTTTTTCTTCCTCCCCTTCCTTCTTCTTCCCCTCTCCCTCTCCTTT
TCCCCCCCCCTCCTCCCCCCCCCCCTTCCTTCTCCCTCTTCTTTTTTCCC
TCCTTCCTTTCTCCCTCCTCTTTTCCTCCTCTTCCTCCTCTGTCCCTTTC
CCTTCTCTCCCACCCACTCTTCTCTCTCTTTTCCTCCTCTCCTCCCCCCC
N

GGGGNNCCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACAGGCTAGCTAGCCTGGTATAC
ACAACAGTGACTAACAGGAGATCCTGTTTTAGGCAAGGTGAAAGGTGTGG
AAAACACTTGACATTGTGATCTGATATGAACATAAAAAATGAAAACTATA
AAAACGAAGAAAAGGGGGTTGTTGAGATGGCTCAGCAGACCTTTCAGAGG
TCCTGGATTCAGTTCCCAGGAATCACATGTTGACTCACACCCATCTGTAA
TGGGATCTGATGTCATCTTCCAGTGTGTCTGAAGACAGGGGCAGTGTACT
CACATACATTAAACAAACAAACAAATCTTTAAAAAATGAGAAAAAAAAGA
AACCATTTATCTCATTAGAAAAAAAAAATGAGGCCAAAATACATTAGAAA
CCCATGTTCAAAGTGTTGATGAGGAATTAGCCCAGTGGTCCCTTGGGTGC
TGGTAGTTCAGTATTCTCTCCTTTCCAGAAAAATAATAACGAAGGATCAA
TGAAAAAATAAGTTTTTTAAATCAGTAGGTATATATTACCGCTGGCATGG
AAATTTTGTGCTGAAAGGAAAACGTAGCAGAATGATCAATTTCAAGGTAT
CCATGAGGGTGAAATAATTAAAAAAAATTATATATATATATCATATATGT
AAATAACATAC

Query= MSMg01no115_d12.g1 MSMg01no115_d12.g1 CHROMAT_FILE:
MSMg01no115_d12.g1 PHD_FILE: MSMg01no115_d12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:07 2005
         (536 letters)



>mm_chr6_35804768_35805701
          Length = 934

 Score =  986 bits (510), Expect = 0.0
 Identities = 529/536 (98%), Gaps = 2/536 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acaggctagctagcctggtatacacaacagtgactaacaggagatcctgttttaggcaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acaggctagctagcctggtatacacaacagtgactaacaggagatcctgttttaggcaag 260

                                                                       
Query: 61  gtgaaaggtgtggaaaacacttgacattgtgatctgatatgaacataaaaaatgaaaact 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtggaaggtgtggaaaacacttgacattgtgatctgatatgaacataaaaaatgaaaact 320

                                                                       
Query: 121 ataaaaacgaagaaaagggggttgttgagatggctcagcagacctttcagaggtcctgga 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 ataaaaacgaagaaaagggggttgttgagatggctcagcagacctttcagaggtcctgta 380

                                                                       
Query: 181 ttcagttcccaggaatcacatgttgactcacacccatctgtaatgggatctgatgtcatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcagttcccaggaatcacatgttgactcacacccatctgtaatgggatctgatgtcatc 440

                                                                       
Query: 241 ttccagtgtgtctgaagacaggggcagtgtactcacatacattaaacaaacaaacaaatc 300
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttccagtgtgtctgaaggcaggggcagtgtactcacatacattaaacaaacaaacaaatc 500

                                                                       
Query: 301 tttaaaaaatgagaaaaaaaagaaaccatttatctcattagaaaaaaaaaatgaggccaa 360
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 501 tttaaaaaatgagaaaaaaaagaaaccatttatctcattagaaaaaaaa--tgaggccaa 558

                                                                       
Query: 361 aatacattagaaacccatgttcaaagtgttgatgaggaattagcccagtggtcccttggg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 aatacattagaaacccatgttcaaagtgttgatgaggaattagcccagtggtcccttggg 618

                                                                       
Query: 421 tgctggtagttcagtattctctcctttccagaaaaataataacgaaggatcaatgaaaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tgctggtagttcagtattctctcctttccagaaaaataataacgaaggatcaatgaaaaa 678

                                                                   
Query: 481 ataagttttttaaatcagtaggtatatattaccgctggcatggaaattttgtgctg 536
           |||||||||||||||||||||||||||||||  |||||||||||||||||||||||
Sbjct: 679 ataagttttttaaatcagtaggtatatattagtgctggcatggaaattttgtgctg 734


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 934
Length adjustment: 10
Effective length of query: 526
Effective length of database: 924
Effective search space:   486024
Effective search space used:   486024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)