Query= MSMg01no115_g23.b1 MSMg01no115_g23.b1 CHROMAT_FILE:
MSMg01no115_g23.b1 PHD_FILE: MSMg01no115_g23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:23 2005
(491 letters)
>mm_chr6_97096425_97097315
Length = 891
Score = 924 bits (478), Expect = 0.0
Identities = 484/486 (99%)
Strand = Plus / Plus
Query: 5 gaattcatttaaaatttccctatcaggactgaacaaagcattgacattatgcgaaatgac 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatttaaaatttccctatcaggactgaacaaagcattgacattatgcgaaatgac 264
Query: 65 agtgattaagaatttactggattcctgctcacaccctcaaccccccaggaaaggataaat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agtgattaagaatttactggattcctgctcacaccctcaaccccccaggaaaggataaat 324
Query: 125 ttcttgggtcagtttctcctatccatccctgacaaactcacaccactctgccgcctttac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttcttgggtcagtttctcctatccatccctgacaaactcacaccactctgccgcctttac 384
Query: 185 cgatcacaagttttccctaagtgtctcttctaaaagataactgaacacaccctgagcatt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cgatcacaagttttccctaagtgtctcttctaaaagataactgaacacaccctgagcatt 444
Query: 245 ccatagtaaagtggggcccttataagactggaaggaccacacaactttcaaaatcagcct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccatagtaaagtggggcccttataagactggaaggaccacacaactttcaaaatcagcct 504
Query: 305 tcactgatgtttatgaatacaatgctctgttcaagttccaggcctattggggtcataagg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tcactgatgtttatgaatacaatgctctgttcaagttccaggcctattggggtcataagg 564
Query: 365 ttaaaacagcgatgatcatgggaacaaatcctttgcccagtaagtaattaaaggggttcc 424
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttaaaacagtgatgatcatgggaacaaatcctttgcccagtaagtaattaaaggggttcc 624
Query: 425 ttgctttggaggccctgaaggctatgttgctatcccttgtaaatccaaggggccttgatc 484
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 625 ttgctttggaggccctgaaggctatgttgctatcccttgtaaacccaaggggccttgatc 684
Query: 485 taacag 490
||||||
Sbjct: 685 taacag 690
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space: 423761
Effective search space used: 423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no115_g23.g1 MSMg01no115_g23.g1 CHROMAT_FILE:
MSMg01no115_g23.g1 PHD_FILE: MSMg01no115_g23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:23 2005
(488 letters)
>mm_chr6_97196059_97196947
Length = 889
Score = 870 bits (450), Expect = 0.0
Identities = 480/490 (97%), Gaps = 3/490 (0%)
Strand = Plus / Minus
Query: 1 cagaaggttggcatggttattc-tcctcattttgtgaaggagacacggatgctttgggaa 59
||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct: 689 cagaaggttggcacggttattcttcc-cattttgtgaaggagacacggatgctttgggaa 631
Query: 60 gttaatagcatgtctagcagacgccactaggaagtggtaggcactaatgttaaaactcgt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 gttaatagcatgtctagcagacgccactaggaagtggtaggcactaatgttaaaactcgt 571
Query: 120 ttttgaggtgtcgaacttttacttagcacgctattttgaatccttggagtgcatatgtaa 179
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 570 ttttgaggtgtcaaacttttacttagcatgctattttgaatccttggagtgcatatgtaa 511
Query: 180 aaccagaccgttctgggcgcatagagctgagaattagagaccctcagagcctccttgaag 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 aaccagaccgttctgggcgcatagagctgagaattagagaccctcagagcctccttgaag 451
Query: 240 gagcaaataataaaaaaaaat-gagcacccttgtaagtatctggaataaaggctccaggg 298
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 450 gagcaaataagaaaaaaaaattgagcacccttgtaagtatctggaataaaggctccaggg 391
Query: 299 actccgctcttcatcagcagatgaagctcaaccaactgcaaatgcatgtctgtttgcttt 358
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 390 actccgctcttcatcatcagatgaagctcagccaactgcaaatgcatgtctgtttgcttt 331
Query: 359 ttaggcagccagtcaaatggcaagcctcaggttactatcttcctgagccaatggagttta 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ttaggcagccagtcaaatggcaagcctcaggttactatcttcctgagccaatggagttta 271
Query: 419 aaatatctgactgttatttcagttttaatattcatagtgtctccataacagtctgtgata 478
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 270 aaatatctgactgttatttcagttttaatattcatagtgtctctataacagtctgtgata 211
Query: 479 aagctgacta 488
||||||||||
Sbjct: 210 aagctgacta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 889
Length adjustment: 10
Effective length of query: 478
Effective length of database: 879
Effective search space: 420162
Effective search space used: 420162
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
