Query= MSMg01no115_h09.b1 MSMg01no115_h09.b1 CHROMAT_FILE:
MSMg01no115_h09.b1 PHD_FILE: MSMg01no115_h09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:25 2005
(410 letters)
>mm_chr6_52044619_52045429
Length = 811
Score = 694 bits (359), Expect = 0.0
Identities = 397/411 (96%), Gaps = 4/411 (0%)
Strand = Plus / Plus
Query: 4 ggaattctgttctaaactcttttcaactgtttttattttattttattttatttcaggggg 63
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctgttctaaactcttttcaaatgtttttattttattttattttatttcaggggg 263
Query: 64 agggggctaagcctgtggaggtcagagggtagcttgtaggttagctctggggacaatacc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agggggctaagcctgtggaggtcagagggtagcttgtaggttagctctggggacaatacc 323
Query: 124 cagcttctt-ggggggtttagcaagcactttcacccgctgagcctcttgccatcccataa 182
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 324 cagcttcttaggggggtttagcaagcactttcacccgctgagcctcttgtcatcccataa 383
Query: 183 tcctgctctactttcttaacaggtgctgaagaagtgtccagatgtaatcacgatataatt 242
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 384 tcctgctctactttcttaacaggtgctgaagaagtgtccagatgtgatcacgatataatt 443
Query: 243 ggataataccattaatccccccaaatcaggaagcagggacgggcaaacctctgagttcat 302
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 444 ggataataccattaatccccccaaatcaggaatcagggacgggcaaacctctgagttcat 503
Query: 303 ggatagtgtggtctacacagctagttcaggacagctagagctacatagagagatcatgtc 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ggatagtgtggtctacacagctagttcaggacagctagagctacatagagagatcatgtc 563
Query: 363 tcacaccaccaaggggaagggcaagaaggtgaagggg---ggaggagacat 410
||| | | ||||||||||||||||||||||||||| || ||||||||
Sbjct: 564 tcagaagaagaaggggaagggcaagaaggtgaaggggttggggggagacat 614
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 811
Length adjustment: 9
Effective length of query: 401
Effective length of database: 802
Effective search space: 321602
Effective search space used: 321602
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no115_h09.g1 MSMg01no115_h09.g1 CHROMAT_FILE:
MSMg01no115_h09.g1 PHD_FILE: MSMg01no115_h09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:25 2005
(513 letters)
>mm_chr6_52139891_52140803
Length = 913
Score = 957 bits (495), Expect = 0.0
Identities = 507/511 (99%)
Strand = Plus / Minus
Query: 1 cactttaaccgctacctgacccggcggcgccgcatcgagatcgcccacacgctctgcttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 cactttaaccgctacctgacccggcggcgccgcatcgagatcgcccacacgctctgcttg 652
Query: 61 tcggagcgccaggtcaagatctggtttcagaaccggagaatgaagtggaagaaagaccac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 tcggagcgccaggtcaagatctggtttcagaaccggagaatgaagtggaagaaagaccac 592
Query: 121 aaacttcccaacaccaagatgcgatcttccaacactgcctcggcccctgccggcccgcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 aaacttcccaacaccaagatgcgatcttccaacactgcctcggcccctgccggcccgcct 532
Query: 181 gggaaagcacaaactcacagcccacacccccatccccaccctctccctggtgcttccaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 gggaaagcacaaactcacagcccacacccccatccccaccctctccctggtgcttccaca 472
Query: 241 cccattccctcctccatataatctagagacctggatcagtttctctcacttatgtgccct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 cccattccctcctccatataatctagagacctggatcagtttctctcacttatgtgccct 412
Query: 301 actcatctcctgctcctgtcctcatctgctcttccctacccaaacccgagacaccaaaac 360
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 411 actcatctcctgctcctgtcctcatctgctcttccctaagtaaacccgagacaccaaaac 352
Query: 361 aaaatccaacttgctggaaaccataaccaaaaagaagacattatccctggttggtgtgac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 aaaatccaacttgctggaaaccataaccaaaaagaagacattatccctggttggtgtgac 292
Query: 421 ccctccaagaggacgtctgtcctcatcctcgttactgcttagtggaacaacctgctgacc 480
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 291 ccctccaagaggacgtctgtcctcgtcctcgttactgcttagtggaacaacctgctgacc 232
Query: 481 tggacaactttgccaggattggacacctgta 511
|||||||||||||||||||||||||||||||
Sbjct: 231 tggacaactttgccaggattggacacctgta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space: 454209
Effective search space used: 454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
