BAC Information

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BAC

Clone NameMSMg01-115H22
Chromosome6 (Build37)
Map Location 36,202,814 - 36,306,812
singlet/doubletdoublet
Overlap gene9330158H04Rik
Upstream gene1810058I24Rik, Slc13a4, BC064033, 1700065J11Rik, Mtpn, LOC100039312, LOC100039327
Downstream geneChrm2, EG620863, LOC100039370, Ptn, LOC100039514, Dgki, EG665024, Creb3l2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-115H22.T7 (MSMg01no115_h22.b1)MSMg01-115H22.TJ (MSMg01no115_h22.g1)
ACCAG327112AG327113
length750718
length of high quality
(start - end)
266 (380 - 645)561 (80 - 640)
definitionCHROMAT_FILE: MSMg01no115_h22.b1 PHD_FILE: MSMg01no115_h22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:27 2005CHROMAT_FILE: MSMg01no115_h22.g1 PHD_FILE: MSMg01no115_h22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(36,202,814 - 36,203,079)(36,306,482 - 36,306,812)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCCGCACCTCCGCGGA
ATTCCCAAAATTGACTNAACACTCCCAAGNAAATGCTCTTTACAGCTTCA
GTACCTTTCACAATGAACATATTCAAAACAATTCCATCTACACATTTAAA
GTCTTTTAGGAAGACGTCACAGAATAATTTACATGAGCAAAAAAAAAAAA
ATAGACCATAGTCACCAATTCAGTGCAGACGTGACTTTAATCTAAATTTT
CTTAGAATATTCTTGCTGTCTCTGCTGATCTTGTTCCTTTCCTCTTATAA
ATGTATGTTTATCTGGGCCCCTGGATANGTATTTCTGATAGACAGATGGA
AGGCCTGCAGAGAATTTGGGCTCATTTTATGCTTCCTTGTCTGAGGCTTT
GCATCTCAGGTCAAGCTGGGACACTGATTAATGTGCAATACAGATGTCAG
CTGTGCAATCAACAACATTTGACACTGGCTGGCAGGATGACTTCTCTGTG
CAGGTGACAATCTCCATTTTCTCGGGTTTGTGTAAGTATCTGCTCCTCCC
CAGGAGAAGAAGTAGCTCTGGGGCATCCCAAGGATATTGATTTCCCAGAC
TTGAGGTTGGAAAAACAGAAGTCCAGATCCAGCTTATGAGATTTCTTGCA
ACATTTCTAAGAAGCATTGATGTTTAATGAGGACTTGCCAAATGATCATA
AATGCAAATGATCCCTTCTTTCCCAGCTACTCAACAGATGGATTTCCAAG

NNGGTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATAGATTTAAGAAAGAACCTG
GGACATGGGAAGAGCTCAGTGGGTAGAAATGATATATACCTAGGTATGTA
GTCAATATGTGAGTCTAACCAACAGATTTCTTGAGGTACAACTCTCAATT
TTTTTTTTAAACTTCATAGTCTATGCTGACACATAGCAAGCGTTAAGCAC
CTATAATCTAGACAGAGTCTCGTATTATAAAGAAAAATTACAACAGAAGG
CATTGAGGTGTCTTGCTATATTTTAACTCAACTATATCTAAGCACAAGAT
TCCTAGCAACTTTAATATATGGGTAGAAGATAGGAAAAAAATAATTAACA
TTGTTCATAGTTTCTTTGCATCACCAAAATGTTCTTCCGGAAATTGACCT
TTTCTCAAGATAAACTTAGTCTTTTATTTTCTTTTAGTTATATATATTGT
TCATAACTGTTTGACTTTTAAATCTTGCATAGTGAGGAAAAAATAATTAT
CAACTTAAATACCTAGGTTAGGTGTTCATTCCCTTAATCCTGTATTTCAA
AATCCATTTCCAAAAGTACCAATTATAAGATTTGCTGGCTAAATGCACAG
CTGGTTTTATTTGCATATTGACCCTTACAAGAACACAGCTTTTCTTCTCT
TATGGGGTCATCAAAGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no115_h22.b1 MSMg01no115_h22.b1 CHROMAT_FILE:
MSMg01no115_h22.b1 PHD_FILE: MSMg01no115_h22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:27 2005
         (266 letters)



>mm_chr6_36202614_36203279
          Length = 666

 Score =  491 bits (254), Expect = e-143
 Identities = 263/266 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcttccttgtctgaggctttgcatctcaggtcaagctgggacactgattaatgtgcaat 60
           |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 tgcttccttgtctgagtctttgcatctcaggccaagctgggacactgattaatgtgcaat 260

                                                                       
Query: 61  acagatgtcagctgtgcaatcaacaacatttgacactggctggcaggatgacttctctgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acagatgtcagctgtgcaatcaacaacatttgacactggctggcaggatgacttctctgt 320

                                                                       
Query: 121 gcaggtgacaatctccattttctcgggtttgtgtaagtatctgctcctccccaggagaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcaggtgacaatctccattttctcgggtttgtgtaagtatctgctcctccccaggagaag 380

                                                                       
Query: 181 aagtagctctggggcatcccaaggatattgatttcccagacttgaggttggaaaaacaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagtagctctggggcatcccaaggatattgatttcccagacttgaggttggaaaaacaga 440

                                     
Query: 241 agtccagatccagcttatgagatttc 266
           |||||||||| |||||||||||||||
Sbjct: 441 agtccagatctagcttatgagatttc 466


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 266
Length of database: 666
Length adjustment: 9
Effective length of query: 257
Effective length of database: 657
Effective search space:   168849
Effective search space used:   168849
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no115_h22.g1 MSMg01no115_h22.g1 CHROMAT_FILE:
MSMg01no115_h22.g1 PHD_FILE: MSMg01no115_h22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:27 2005
         (561 letters)



>mm_chr6_36306052_36307012
          Length = 961

 Score =  625 bits (323), Expect = 0.0
 Identities = 329/331 (99%)
 Strand = Plus / Minus

                                                                       
Query: 231 gtcttgctatattttaactcaactatatctaagcacaagattcctagcaactttaatata 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 gtcttgctatattttaactcaactatatctaagcacaagattcctagcaactttaatata 702

                                                                       
Query: 291 tgggtagaagataggaaaaaaataattaacattgttcatagtttctttgcatcaccaaaa 350
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 701 tgggtagaagataggaaaaaaataattaacattgttcatagtttctttgcatcagcaaaa 642

                                                                       
Query: 351 tgttcttccggaaattgaccttttctcaagataaacttagtcttttattttcttttagtt 410
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 tgttcttccggaaattgaccttttctcaagataaacttagtcttttattttcttttagtt 582

                                                                       
Query: 411 atatatattgttcataactgtttgacttttaaatcttgcatagtgaggaaaaaataatta 470
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 atatatattgttcataactgtttgacttttaaatcttgcatagtgaggaaaaaataatta 522

                                                                       
Query: 471 tcaacttaaatacctaggttaggtgttcattcccttaatcctgtatttcaaaatccattt 530
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 521 tcaacttaaatacctaggttaggttttcattcccttaatcctgtatttcaaaatccattt 462

                                          
Query: 531 ccaaaagtaccaattataagatttgctggct 561
           |||||||||||||||||||||||||||||||
Sbjct: 461 ccaaaagtaccaattataagatttgctggct 431


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space:   524001
Effective search space used:   524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)