Query= MSMg01no115_k19.b1 MSMg01no115_k19.b1 CHROMAT_FILE:
MSMg01no115_k19.b1 PHD_FILE: MSMg01no115_k19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:40 2005
(488 letters)
>mm_chr6_13637609_13638497
Length = 889
Score = 915 bits (473), Expect = 0.0
Identities = 482/485 (99%), Gaps = 1/485 (0%)
Strand = Plus / Minus
Query: 5 gaattctacaagcacatcctggcggcttggaagtcacactgagagctgagaagtgactgg 64
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 gaattctacaagcacatcatggcggcttggaagtcacactgagagctgagaagtgactgg 630
Query: 65 gaggggaaaagctgtacccagggcacactgtttgc-aaaaactgtgcctgaacgagatta 123
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 629 gaggggaaaagctgtacccagggcacactgtttgcaaaaaactgtgcctgaacgagatta 570
Query: 124 cctatcaatctgtttataatgagcttttctttccaaatcgatctctatcaccaccctggt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 cctatcaatctgtttataatgagcttttctttccaaatcgatctctatcaccaccctggt 510
Query: 184 aaggatacagtggaacactggcaaagctccaactaaaccgtggactcccaagtcacaaat 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 aaggatacagtggaacactggcaaagctccaactaaaccgtggactcccaagtcacaaat 450
Query: 244 ttccagggtcaccttacatttgggcaaattaatattggggcctttcacaaaagcagttgc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 ttccagggtcaccttacatttgggcaaattaatattggggcctttcacaaaagcagttgc 390
Query: 304 aatggtattctatgtcacctttgtttctgctggtttgtgtggcactgtctcttaacaatt 363
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 389 aatggtattctatgtcacctttgtttttgctggtttgtgtggcactgtctcttaacaatt 330
Query: 364 tctcccaccatcttccctttctactccatctaagcgctcagacacatgacctttttgcca 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tctcccaccatcttccctttctactccatctaagcgctcagacacatgacctttttgcca 270
Query: 424 atctcattaaggctcgggctcattttctcaagttccctatcaatcgaggtaattgcttcc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 atctcattaaggctcgggctcattttctcaagttccctatcaatcgaggtaattgcttcc 210
Query: 484 tacac 488
|||||
Sbjct: 209 tacac 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 889
Length adjustment: 10
Effective length of query: 478
Effective length of database: 879
Effective search space: 420162
Effective search space used: 420162
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no115_k19.g1 MSMg01no115_k19.g1 CHROMAT_FILE:
MSMg01no115_k19.g1 PHD_FILE: MSMg01no115_k19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:40 2005
(581 letters)
>mm_chr6_13510625_13511605
Length = 981
Score = 1077 bits (557), Expect = 0.0
Identities = 575/581 (98%)
Strand = Plus / Plus
Query: 1 attaaaagagaattgattagcaggtttgatattctttaaaataaattagattttattttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attaaaagagaattgattagcaggtttgatattctttaaaataaattagattttattttg 260
Query: 61 cataaatttcagctggaaatgaaattgtaaattaaaatgtctcctaatataattacattg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cataaatttcagctggaaatgaaattgtaaattaaaatgtctcctaatataattacattg 320
Query: 121 tcatctattataaatcattttggaaataaaaactctacttcttaatcaagcagttttaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcatctattataaatcattttggaaataaaaactctacttcttaatcaagcagttttaag 380
Query: 181 cagaatgaaacggagacctaagcagcagctgaaatgcatgagcattgtggaacacagagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagaatgaaacggagacctaagcagcagctgaaatgcatgagcattgtggaacacagagg 440
Query: 241 agaaaataatatgcacaccctggccatgaatacctaatatgaagatgagtggctatatac 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaaaataagatgcacaccctggccatgaatacctaatatgaagatgagtggctatatac 500
Query: 301 gggatataggttaagtttagtatattcattttgaagatgtatttttataacttgaaaaat 360
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 501 gggatataggttaagtttagtatattcattttgaagatttatttttataacttgaaaaat 560
Query: 361 ctcatttttttgcatttaaaataaggtaaggttgtggcaaaaggtttgtccatctgtttc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctcatttttttgcatttaaaataaggtaaggttgtggcaaaaggtttgtccatctgtttc 620
Query: 421 ttctggataattaagatcatagaatatatttgggcatgactaaactgaatggtaataaat 480
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttctggataattaagatcataggatatatttgggcatgactaaactgaatggtaataaat 680
Query: 481 gcataattgtttcagtgggatgtgttatgctttggggtaacttacatcttacttttttct 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 681 gcataattgtttcagtgggatgtgttatgctttggggtaacttacatcttacttttctct 740
Query: 541 ttttgatctccttcttctccttctccttcttcttctcctcc 581
|||| |||||||||||||||||||||||||||||||||||
Sbjct: 741 ttttcttctccttcttctccttctccttcttcttctcctcc 781
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space: 554441
Effective search space used: 554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
