BAC Information

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BAC

Clone NameMSMg01-115N05
Chromosome6 (Build37)
Map Location 105,461,914 - 105,462,213
singlet/doubletsinglet
Overlap genenone
Upstream geneCntn6, LOC384470
Downstream geneLOC100043716, LOC100043350, Cntn4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-115N05.T7 (MSMg01no115_n05.b1)MSMg01-115N05.TJ (MSMg01no115_n05.g1)
ACCAG327358AG327359
length749730
length of high quality
(start - end)
300 (69 - 368)485 (79 - 563)
definitionCHROMAT_FILE: MSMg01no115_n05.b1 PHD_FILE: MSMg01no115_n05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:52 2005CHROMAT_FILE: MSMg01no115_n05.g1 PHD_FILE: MSMg01no115_n05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACATGCCTCTTCTGGCTAGCTACCCAGTTACGGAAGCACTTACTCC
TGTGGTAGTGTAGTTACATTTAAAATTGCACTCATGTGTTTGTAGCATGT
TGCAGGTATGTGTTTATGTGGGCATATGCATGTTTATCAACATACATAGG
AAGGCAAGCAACCTACTGAAAACTGATACCCTTTTTGATTTGTCAGCTTT
TTCCTTTGAGACAGGCTTCTTCCTGCACCTAGATTGCATCCATTTGGTTA
GACTGATAGGCCAATGACATCTAAGGACCCACCTGTTTTGCCCTCCACTT
TGCTCCCAGTGCTAGGTGCTGGCAGTGCAGAGTACAACACCATATCTTGC
TTTTATGTACCCCCCAAGAATTTAAACTCAATTCCTCATGCCACCGTCCT
TGTTACCTAATCCCCCGTGCTCCCCCCCTAGCCCATCACTTCACATTTTG
CTGTATAATCCTACCTACCGCCCTTCATTCTGCTTTTCCCCCTTTTTTCC
CTCTCCCCCCCCCCCCACACCCTTTTCATGTTCTCCCCTTTTTTTTTCCC
CCCCCCCCTCCCTTCTCTCCCTCCCCACCCTCCTTCTTACCCCCACCCAC
CCCCCCTATTTTTCCCTCCCCCCTTTCCCCCCCCTCATCCCCCCCTTCTT
CCCCCCCTTATTTCCCCTCTTTTTACATCTCCCTCTTACCCCCCCCCCT
NNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGG
CAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATG
CAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAA
GATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAG
GAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGG
AAATCAGTCTGGCGGTTCCTCAAAAAATTGGACATAGTACTACCGGAAGA
TCCAGCAATACCTCTTCTGGGCATATATTCAGAAGTTTCCCCAACAGGTG
AGAAGGACACATGCTCCACTATGCTCATAGCAGCCTTATTTATAATAGCC
AGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAA
AATGTGGTACATTTACACAATGGAGTACTACTCAGCTATTATAAAGAATG
AATTTATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCAACCTG
AGTGAGGTAACACATTCACAAAGGAACTCCCTCAATATGTACTCACTTTT
AAGTGGATATTAGCCCAAAACCTACGATACCCTAGATATAAGATTCTTTT
TGCTATACTTTTGACAACTCTGTAAAAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no115_n05.b1 MSMg01no115_n05.b1 CHROMAT_FILE:
MSMg01no115_n05.b1 PHD_FILE: MSMg01no115_n05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:52 2005
         (300 letters)



>mm_chr6_105461841_105462540
          Length = 700

 Score =  542 bits (280), Expect = e-158
 Identities = 295/300 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gctagctacccagttacggaagcacttactcctgtggtagtgtagttacatttaaaattg 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gctatctacccagttacggaagcacttactcctgtggtagtgtagttacatttaaaattg 314

                                                                       
Query: 61  cactcatgtgtttgtagcatgttgcaggtatgtgtttatgtgggcatatgcatgtttatc 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 cactcatgtgttcgtagcatgttgcaggtatgtgtttatgtgggcatatgcatgtttatc 254

                                                                       
Query: 121 aacatacataggaaggcaagcaacctactgaaaactgataccctttttgatttgtcagct 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 253 aacatacataggaaggcaagcaacctactgaaaactgataccctttttgatttgtcagtt 194

                                                                       
Query: 181 ttttcctttgagacaggcttcttcctgcacctagattgcatccatttggttagactgata 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 193 ttttcctttgagacaggcttcttcctgcacctagattgcatcaatttggttagactgata 134

                                                                       
Query: 241 ggccaatgacatctaaggacccacctgttttgccctccactttgctcccagtgctaggtg 300
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 133 ggccaatgacatctaaggacccgcctgttttgccctccactttgctcccagtgctaggtg 74


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 700
Length adjustment: 9
Effective length of query: 291
Effective length of database: 691
Effective search space:   201081
Effective search space used:   201081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)