BAC Information

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BAC

Clone NameMSMg01-116C01
Chromosome6 (Build37)
Map Location 132,689,888 - 132,690,299
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC639802, EG114600, Prb1, LOC631126, LOC100043878, Prpmp5, EG667929, EG381818, Prh1, Prp2, A630073D07Rik, Tas2r120, Tas2r121, Tas2r122, Tas2r115
Downstream geneTas2r124, Tas2r102, Tas2r136, Tas2r145-ps3, Tas2r117, Tas2r111-ps2, Tas2r123, Tas2r116, Tas2r110, Tas2r113, Tas2r142-ps5, Tas2r125, Tas2r146-ps1, Tas2r129, Tas2r131, Tas2r109, EG667992, LOC100043634, Tas2r140, LOC668002, Tas2r141-ps4, 2700089E24Rik, LOC630618, 5530400C23Rik, EG545884, EG626372, LOC100043649, LOC100043653
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-116C01.T7 (MSMg01no116_c01.b1)MSMg01-116C01.TJ (MSMg01no116_c01.g1)
ACCAG327585AG327586
length714715
length of high quality
(start - end)
583 (55 - 637)567 (82 - 648)
definitionCHROMAT_FILE: MSMg01no116_c01.b1 PHD_FILE: MSMg01no116_c01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:17 2005CHROMAT_FILE: MSMg01no116_c01.g1 PHD_FILE: MSMg01no116_c01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCCCCTAATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTGGTGCAATTCTCATAGGTCTGCCTTTATATGTTAC
TTGACCTTTTTCCTTACTGCTGTTAATACTCTATCTTTATTTAGTGCATT
TGTTGTTCTGATTATTATATGTTGGGAGGAATTTCTTTTCTGGTCCAGTC
TATTTGGAATTCTGTATGCTTCTTGGGCATCTCTTTCTTTAGGTTTGGGA
AGTTTTCTTCTATAATTTTGTTGAAGATAGTTGTTGGACCTTTAGGTTGA
AAATCTTCATTCTCATCCATACCTGTTATCCAAAGGTTTGGTCTTCACAT
ATCCTGGATTTCCTGGATATTTTGAGTTAGGATATTTTTGCATTTTGCAT
TTTCTTTGATATTTTGTCCATTTTCCCTATGGAATCTTCTGCACCTGATA
TTCTCTCTTCCATCTCTTGTATTCTGTTGCTGATGCTCATATCTAGGGTT
CCTGATTTCTTTCCTAGGATTTCTATCTCCAGAGTTGTCTCCCTTTGGGT
TTTCTTCATTATTTCTACGTCCCCTTTCAGATCTTGGATGGTTTTGTTCA
ATTCCATCACCTGTTTGATTTTGTTTCTTGTAATCCTTTAAAGGATATTT
GTGTTTCCTCTAAGGACTTCTATCTGTTTAGTAGTGTTTCCCTGTAATTC
TTTGAGGGATTGTT
NNNNNNNGGCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTAAAGTGGGGACATGGCT
TTTCAGCCTGTCTCTGACTACATTACATGTCTTTGGATCCCTTTCCCCTA
ATGGGGCTGCCTTTTCTAGCCTCAGCGGAAGAGGCAACACACGTGTTAGT
CCTCTGAACCACTAAGCTATCTCTCAAGCCCTGGGGGAAAAGAGTTCTTT
TATCTTTGTTAGTGATATGTCATTTAAAGTTAAGATGAAAATATTCTAAT
CTCTTGGTGACTGTACAAAATTTTTATAAAAATTACTGAATATGGTCTTG
TAAAACACTCCTTTTAAAATCAACATTATAAGAATATTTCTGAATATTTC
TGCAAATGTTTTCTTCCTGATACCTTGTATAAAATAGAGAAGTGGGTGAG
AGAGAAAGAGAGAGAGAGAGACAGAGAGAGAGACAGAGAGACAGAGATAA
CATAGTCCTTACTAGTGATTTGTATTCAACAAATGACTATATCAATTGAG
GGGGCTCTGAAATGTTAGCAGTTTTATATGTACTAGTATATATGTCAATT
TGCCGTGGAATTCATGGTTTTGTTTCTTTATCCCCTATCTAGACTAGCCC
AAGTACAAACAAGATGAAAACAGTCTATATTTTTCAGTGGGGACTTTTCA
TACCTAAAACAGATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no116_c01.g1 MSMg01no116_c01.g1 CHROMAT_FILE:
MSMg01no116_c01.g1 PHD_FILE: MSMg01no116_c01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:17 2005
         (567 letters)



>mm_chr6_132689734_132690700
          Length = 967

 Score =  781 bits (404), Expect = 0.0
 Identities = 410/412 (99%)
 Strand = Plus / Minus

                                                                       
Query: 156 gaaaagagttcttttatctttgttagtgatatgtcatttaaagttaagatgaaaatattc 215
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 gaaaagagttcttttatctttgttagtgatatgtcatttaaagttaagatgaaaatattc 507

                                                                       
Query: 216 taatctcttggtgactgtacaaaatttttataaaaattactgaatatggtcttgtaaaac 275
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 taatctcttggtgactgtacaaaatttttataaaaattactgaatatggtcttgtaaaac 447

                                                                       
Query: 276 actccttttaaaatcaacattataagaatatttctgaatatttctgcaaatgttttcttc 335
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 446 actccttttaaaatcaacattataataatatttctgaatatttctgcaaatgttttcttc 387

                                                                       
Query: 336 ctgataccttgtataaaatagagaagtgggtgagagagaaagagagagagagagacagag 395
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ctgataccttgtataaaatagagaagtgggtgagagagaaagagagagagagagacagag 327

                                                                       
Query: 396 agagagacagagagacagagataacatagtccttactagtgatttgtattcaacaaatga 455
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 326 agagagacagagagacagagataacatagtccttgctagtgatttgtattcaacaaatga 267

                                                                       
Query: 456 ctatatcaattgagggggctctgaaatgttagcagttttatatgtactagtatatatgtc 515
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ctatatcaattgagggggctctgaaatgttagcagttttatatgtactagtatatatgtc 207

                                                               
Query: 516 aatttgccgtggaattcatggttttgtttctttatcccctatctagactagc 567
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 aatttgccgtggaattcatggttttgtttctttatcccctatctagactagc 155


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space:   533049
Effective search space used:   533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)