BAC Information

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BAC

Clone NameMSMg01-116D03
Chromosome6 (Build37)
Map Location 29,667,941 - 29,668,390
singlet/doubletsinglet
Overlap geneTspan33
Upstream geneSnd1, Lrrc4, LOC100041367, Lep, Rbm28, D330027H18Rik, Impdh1, 2310016C08Rik, AI507611, BC048651, Calu, Opn1sw, 4921511K06Rik, Flnc, Atp6v1f, EG668210, Crim2, Irf5, Tnpo3
Downstream geneSmo, 4631427C17Rik, D330017J20Rik, 1700023L04Rik, 1700080G18Rik, Nrf1, Ube2h, Zc3hc1, 2410127E18Rik, 2700094F01Rik, 1700025E21Rik, Cpa2, Cpa4, Cpa5, Cpa1, Tsga14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-116D03.T7 (MSMg01no116_d03.b1)MSMg01-116D03.TJ (MSMg01no116_d03.g1)
ACCAG327636AG327637
length711715
length of high quality
(start - end)
540 (51 - 590)450 (81 - 530)
definitionCHROMAT_FILE: MSMg01no116_d03.b1 PHD_FILE: MSMg01no116_d03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:23 2005CHROMAT_FILE: MSMg01no116_d03.g1 PHD_FILE: MSMg01no116_d03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTCCTATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCACACTTCCCAGCCCCTTACCCATAAAGACCCCTAACTTT
CAAGCCTCGTGGCCGGCATCTGTTATCTCCTGTGTGGGATACATGTCGGT
CCAGAGCTCCGTAATTAAACGTCCTCATGTAATTACAGCAAGATGGGTCC
TCATGTTTCTTTGGGTGCTCTCACACTCCCGAGACTAGAGTGGGGGTCCC
CAAAAGGGGGTCTTACAGTTCCAGTCCTGACTTCCTTGGTGATGAACAGC
AGTGTGGAAGTGTAAGCTGAATAAACCCTTTCCTCCCCAACTTGCTTCTT
GGTCATGTTGTCTGTGCAGGAATAGAAACCCTGACTAAGATACTTACATA
CACTTAAATAATACATACACATAAATAAATCTTTTTTAAAAATCATGTTA
ACCTGGATGATGGTGGCGCATGCTTTTTATTCTAGCACTCCGAAGGCAGA
GGCGGATGGATTTCTATGAGTCCAAGGCCAGCCTACAAAGAGAGTCCAGT
ATAGCCAGAGCTACACAGAAAAAAAAAAACATATCTTGGAAAAAATTATA
TAACCCAGCCTTGCTGGATGTGGTAGCTCACCCTTTAATCTCAGTACTCT
TCTATCAGAGGCAGGGGGATCCCTATGAATTTGATATCATCCTTGTCTAA
ACAGTGACGTC
CCCCCCACGATGATAGAGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGGCATGTATGGCTTAGT
CCGGCACGCAGAATTTAGGGACCACGCCCTCCAACATTTTACAGAGCGGG
TGAGGATGAATTTGGCTGCTGTTATACCCCTTGCCCTTGCAGCCTTGTTT
CCATGGAGACGAGGGAGGAGCAGGATATAGCTCACTCTGACTACCTGGGA
GTGCGGCTAGGCAAGCATTTGGTAAACATACCCCCTTCACTCCTATCCCC
CATGTGCCCTGCGGTCTCGATCCGACCCCTAGGTTCCCTAGGCTCCTGCT
GCTCTGCCCGCTGCACTCCCAGCCTCTCTGGAGGTGGAATTGTGCCAACT
GGACTCCTGCAGGGCTGCCAGTATCTGTGCACAGCCAGGTCTCCCTGGCA
GCAGACTCTGTCCACCTAGCTCAGCAGCAGCCCTAACAGAGCTGTCTGTT
GTGCCTCAGTATGCAGCTAGTAATCCTACAGCTTTCTGTGCCGCTGCAGT
TTCCACACCTCTGCCCAGAGGAAACTAAAAATACAAACTCCAATGTTCAA
GGTTACATACAGCATGAATTAAACCTCGGACAATGCTGAGGCTAGGATGG
GCAGATGAGGCACATCCTTTTGGAGACCTGTACCTTTCTGTGTTCTTGCC
TTCTGAAGCTTGCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no116_d03.g1 MSMg01no116_d03.g1 CHROMAT_FILE:
MSMg01no116_d03.g1 PHD_FILE: MSMg01no116_d03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:23 2005
         (450 letters)



>mm_chr6_29667741_29668590
          Length = 850

 Score =  818 bits (423), Expect = 0.0
 Identities = 444/453 (98%), Gaps = 6/453 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagggcatgtatggcttagtccggcacgcagaatttagggaccacg--ccctcc-aacat 57
           ||||||||||||||||||||||||||||||||||||||||||||||     ||| |||||
Sbjct: 650 aagggcatgtatggcttagtccggcacgcagaatttagggaccacggt---tccaaacat 594

                                                                       
Query: 58  tttacagagcgggtgaggatgaatttggctgctgttataccccttgcccttgcagccttg 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 tttacagagcgggtgaggatgaatttggctgctgttataccccttgcccttgcagccttg 534

                                                                       
Query: 118 tttccatggagacgagggaggagcaggatatagctcactctgactacctgggagtgcggc 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 tttccatggagacgagggaggagcaggatatagctcactctgactacctgggagtgcggc 474

                                                                       
Query: 178 taggcaagcatttggtaaacatacccccttcactcctatcccccatgtgccctgcggtct 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 473 taggcaagcatttggtaaacatacccccttcactcctatcccccatgtgccctgcggtcc 414

                                                                       
Query: 238 cgatccgacccctaggttccctaggctcctgctgctctgcccgctgcactcccagcctct 297
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 413 cgatccgacccctaggttccctaggctcccgctgctctgcccgctgcactcccagcctct 354

                                                                       
Query: 298 ctggaggtggaattgtgccaactggactcctgcagggctgccagtatctgtgcacagcca 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 ctggaggtggaattgtgccaactggactcctgcagggctgccagtatctgtgcacagcca 294

                                                                       
Query: 358 ggtctccctggcagcagactctgtccacctagctcagcagcagccctaacagagctgtct 417
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 ggactccctggcagcagactctgtccacctagctcagcagcagccctaacagagctgtct 234

                                            
Query: 418 gttgtgcctcagtatgcagctagtaatcctaca 450
           |||||||||||||||||||||||||||||||||
Sbjct: 233 gttgtgcctcagtatgcagctagtaatcctaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 850
Length adjustment: 10
Effective length of query: 440
Effective length of database: 840
Effective search space:   369600
Effective search space used:   369600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)