BAC Information

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BAC

Clone NameMSMg01-116D11
Chromosome6 (Build37)
Map Location 119,405,188 - 119,405,476
singlet/doubletsinglet
Overlap geneWnt5b
Upstream geneZfp248, Zfp9, Ankrd26, Cacna1c, Dcp1b, Cacna2d4, Lrtm2, Adipor2
Downstream geneFbxl14, Erc1, LOC666887, Rad52, Wnk1, EG406236, Ninj2, B4galnt3, Ccdc77, Jarid1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-116D11.T7 (MSMg01no116_d11.b1)MSMg01-116D11.TJ (MSMg01no116_d11.g1)
ACCAG327650AG327651
length722724
length of high quality
(start - end)
556 (79 - 634)292 (78 - 369)
definitionCHROMAT_FILE: MSMg01no116_d11.b1 PHD_FILE: MSMg01no116_d11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:24 2005CHROMAT_FILE: MSMg01no116_d11.g1 PHD_FILE: MSMg01no116_d11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTAACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG
CCGCGGAATTCTATCTTTGTCCAGCATGTAGTAGGGACTTTCTTCTCTGT
CAAGAAGTGCTTTCATCTTTTGAAGGCTGACATGGGTGAGTCTGTGAAGG
GAGTCTAATAGCTCGAAAACAAACTGATCGGGCATCACAGGCTTGCCGTG
CAGGACCCAATATCCTTTTATTTCATCATAAGTGGCTCCCAACTCTTGTA
ACCTTTTTTTATCTGTCTCCGTGTAATGGAAGAAGCTAGGGGTGTATGGG
GTAGACTTTTCTATGAGAAGCGTGGTGGTTTCTGTGACCGCCCTCATGGC
CGCCTCTCTAGCGGCCTGATCCGCCATTCGGTTGCCCCTAGCTTCAGCAC
TATTTCCTTTTTGATGTCCTGGACAGTGGATTATACTGAGTCTTTTGGGC
AGAAAGAGAGCTTTTAGCAAGGCCAAGATCTCGCTTTTGTTTTTGATTTC
TTTGCCCTCTGAGGTCAGCAACCCTCGCCTCCTGTATATTTCTCCATGGA
CGTGAGCCGTAGCGAAGGCATAGCGGCTATCAGTGTAGACATTTAGCTTC
TTACCTTCTGCCATCCTTAGGGCTTGAGTAAGTGCCATCAATTCGGCTCG
CTGGGCGGATGTTCCAGCCGGCAGTGCCCTTGCCCAGATTACCTCGGTCT
CAGTGGTCACCGCTGCTCCAGC
NCCTCGATATAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCACCCTGGGACCCATGGGAAGAT
GGAAGGAGAGACCCAACTCTATACACACTTGTCCTCTGGCCACACAGCAC
ACAGTGGTACATTCAATTATGTGTGTACACCGTGCACACACACAGATGGC
AGATGTCACATCCAGCACAGCTCCAGGGACTGACATAACTGGAGAGATGA
GGGAATGAAGGAAGAAAGGGTCCTGGGACACACAGAAAAGCTGGGGTCGG
GTGGACTGGAAGCCCTGGTGGAGAAGCCTCGGCACCCAGAAGCTTGCTGT
GTCTATTATATACAGTTAAACAGGGAGGCGGATTTATAGCATGCAGTGAG
CAGTCTCTGTCGGGGAGTAGTTCCCAGTGGTCATGTGAGGACACGACTAC
AGTGAACATTTTCTGCACACACTGCCAACATTCACACCTAGACCAGAGGA
AGGCTTTGCCATCCATCCCTCTGATCTTTGCCAGTCAAGTGGGGCTGAGG
CATTGGTCCTTGACATGGCAGTGCCTGTGTCGACAGCCCACGTTTATTCA
GGATTTCACTCACTCAGGGCTTCCTGTGTTTCCCACCAACAAATGATGAT
ATTATTATAGTAATACTAATAATCACATTAGTAACAATAATAAACCAACA
ACCAATCCACAGATAAATGCCAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no116_d11.g1 MSMg01no116_d11.g1 CHROMAT_FILE:
MSMg01no116_d11.g1 PHD_FILE: MSMg01no116_d11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:25 2005
         (292 letters)



>mm_chr6_119404985_119405676
          Length = 692

 Score =  536 bits (277), Expect = e-157
 Identities = 286/289 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   cctgggacccatgggaagatggaaggagagacccaactctatacacacttgtcctctggc 63
           |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 cctggggcccatgggacgatggaaggagagacccaactctatacacacttgtcctctggc 263

                                                                       
Query: 64  cacacagcacacagtggtacattcaattatgtgtgtacaccgtgcacacacacagatggc 123
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cacacagcacgcagtggtacattcaattatgtgtgtacaccgtgcacacacacagatggc 323

                                                                       
Query: 124 agatgtcacatccagcacagctccagggactgacataactggagagatgagggaatgaag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agatgtcacatccagcacagctccagggactgacataactggagagatgagggaatgaag 383

                                                                       
Query: 184 gaagaaagggtcctgggacacacagaaaagctggggtcgggtggactggaagccctggtg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gaagaaagggtcctgggacacacagaaaagctggggtcgggtggactggaagccctggtg 443

                                                            
Query: 244 gagaagcctcggcacccagaagcttgctgtgtctattatatacagttaa 292
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gagaagcctcggcacccagaagcttgctgtgtctattatatacagttaa 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)