BAC Information

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BAC

Clone NameMSMg01-116H13
Chromosome6 (Build37)
Map Location 90,821,818 - 90,822,378
singlet/doubletsinglet
Overlap genenone
Upstream geneV1rb4, V1r-ps4, V1ra2, V1rb8, V1ra4, V1ra3, V1rb2, V1rb1, V1ra1, LOC625050, V1ra7, V1ra8, V1rb3, LOC100043191, V1r-ps5, V1ra9, BC048671, Chst13, Uroc1, Zxdc, Ccdc37, Klf15, Aldh1l1, Slc41a3, Iqsec1, LOC100043646
Downstream geneEG665685, Nup210, Hdac11, Fbln2, LOC665716, Wnt7a, LOC100043659, LOC625420, Chchd4, Tmem43, Xpc, Lsm3, Slc6a6, Grip2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-116H13.T7 (MSMg01no116_h13.b1)MSMg01-116H13.TJ (MSMg01no116_h13.g1)
ACCAG327844AG327845
length708716
length of high quality
(start - end)
563 (51 - 613)48 (263 - 310)
definitionCHROMAT_FILE: MSMg01no116_h13.b1 PHD_FILE: MSMg01no116_h13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:44 2005CHROMAT_FILE: MSMg01no116_h13.g1 PHD_FILE: MSMg01no116_h13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAGGAATATCCCCCCTCCCGAGTAGAGCCCCAGACAGAGTG
AGGTGTCCTGGCTATGGGTATGTGACCTTCACTCTGAGCAAAGACAGTTA
TCTCTTGGCATCCGTTGCATCTGCCTTAAGTAACAGGCAATCTGAGCAGA
TCGTATACAGTCCACTCACTGTCCATGGGAGAAGCCCACACCCTAGACAC
CAATCAGCCCCGACCCCGTAGTCAAAAATTCCTTCCTCTTTAGGCCACTT
TATTTTTAGCTAACTGTTTGAATGAATAGTATAGAATACTGTTCATGCAG
GATGATCGCTAAGTAGACGCCAAAGCGGCTCCTGATCCTAGCTGCCAAAG
AGGTCATTTTACTAGTGTCTTTATTTCTTTCCACCTCCTGTATTATCTCA
CATCTGTCCTTTCTTGTGGAAAGGGAGCTACAGATATACAGGCTCTCTAC
ACCCTGCCATCTCCTTAACTACTTGTTCCTTCTGAGCTTTCCTTCCCCCT
TGTTCCTCGCATAGTAGGGCCACTTTGGCTGCTTCACTGATTGTCTCATC
AAGTTGTTCTAGTCACCCATCTGATCCTTCCTTCCATCTCCACCCAGTCT
CTACCACCCAGGATGTCTCCCCTCTTTGATATCAGCTCCCACTGTTATCA
GCCTGGAC
TTTTTTATCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTAATATTGATCAGGCCC
TCTCTAGCAGATTCTGAATGTGGGACATGCTTCGGGGTATCAGGGCCCAC
CTGGTCCTGGGAGAGAAGTCCAGCATATGTGGTTAGAAGCGTGTGTCCGG
AGATGAGCTGGACACCTGCGGGCCCACAGTGTGCGCTCCCTGCAGACGAT
GCCTGCTCAGCAGTGCCTTCTTCCCAGGTGAAATCTGGATCCCCGGCAGC
GCTAGCCTTCCGGAACGAGAAGTCATTTGGGCTACCCAGGTTCATCACGT
ACACAGCGCGGCGTCTTGTATCTCACAGCTGGCACGCACGGGCCCTCTGT
CCACTGCCCTGACCTCGTCCAGCCCTGCCACTAACCAGGCCGTCACCATT
CCAGTCACCGTGGCCTTTGTGTTGGATCGTCGTGGGCCTGGTGCCTGTGA
GTCATAGATGAGATATCAACTGACCCAGATCTGGTCAGGGAAAGCTGGGC
GAGCGCTCCTTGGGTATCGTTGGGTTCGTACGGCGTGAAAGTTGGACAAG
TCACATACCTACGATGTCTCTCAAAGTGGCTGTCTCTTTCTGTCACCAGT
GCCATAATACTTCCCCTTGTCCCCACCTCCTTCTGCAAAGACCCGTGCTT
CAAAATTTTGGTCTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no116_h13.b1 MSMg01no116_h13.b1 CHROMAT_FILE:
MSMg01no116_h13.b1 PHD_FILE: MSMg01no116_h13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:44 2005
         (563 letters)



>mm_chr6_90821615_90822578
          Length = 964

 Score =  984 bits (509), Expect = 0.0
 Identities = 548/563 (97%), Gaps = 5/563 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaggaa---tatcccccctcccgagtagagccccagacagagtgaggtgtcctg 60
           ||||||||||||   ||  |||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 204 ggaattcaggaagagta--ccccctccggagtagagccctagacagagtgaggtgtcctg 261

                                                                       
Query: 61  gctatgggtatgtgaccttcactctgagcaaagacagttatctcttggcatccgttgcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gctatgggtatgtgaccttcactctgagcaaagacagttatctcttggcatccgttgcat 321

                                                                       
Query: 121 ctgccttaagtaacaggcaatctgagcagatcgtatacagtccactcactgtccatggga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ctgccttaagtaacaggcaatctgagcagatcgtatacagtccactcactgtccatggga 381

                                                                       
Query: 181 gaagcccacaccctagacaccaatcagccccgaccccgtagtcaaaaattccttcctctt 240
           ||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||
Sbjct: 382 gaagcccacaccctagacaccaatcagtcccaacaccgtagtcaaaaattccttcctctt 441

                                                                       
Query: 241 taggccactttatttttagctaactgtttgaatgaatagtatagaatactgttcatgcag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 taggccactttatttttagctaactgtttgaatgaatagtatagaatactgttcatgcag 501

                                                                       
Query: 301 gatgatcgctaagtagacgccaaagcggctcctgatcctagctgccaaagaggtcatttt 360
           ||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 502 gatgatcactaggtagacgccaaaggggctcctgatcctagctgccaaagaggtcatttt 561

                                                                       
Query: 361 actagtgtctttatttctttccacctcctgtattatctcacatctgtcctttcttgtgga 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 562 actagtgtctttatttctttccacctcctgtattatctcacatctgtcctttcttgtgaa 621

                                                                       
Query: 421 aagggagctacagatatacaggctctctacaccctgccatctccttaactacttgttcct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 622 aagggagctacagatatacaggctctctacaccctgccatctccttaaccacttgttcct 681

                                                                       
Query: 481 tctgagctttccttcccccttgttcctcgcatagtagggccactttggctgcttcactga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 tctgagctttccttcccccttgttcctcgcatagtagggccactttggctgcttcactga 741

                                  
Query: 541 ttgtctcatcaagttgttctagt 563
           |||||||||||||||||||||||
Sbjct: 742 ttgtctcatcaagttgttctagt 764


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 964
Length adjustment: 10
Effective length of query: 553
Effective length of database: 954
Effective search space:   527562
Effective search space used:   527562
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)