BAC Information

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BAC

Clone NameMSMg01-117D11
Chromosome6 (Build37)
Map Location 43,522,810 - 43,611,607
singlet/doubletdoublet
Overlap geneTpk1
Upstream geneEapa2, BC011487, 3321401G04Rik, LOC100039918, GA_x5J8B7W6337-801345-802245, Olfr453, Olfr38, Olfr452, Olfr451-ps1, Olfr450, Olfr449, Olfr448, Olfr447, Olfr446, GA_x5J8B7W6337-1014614-1015483, Olfr444, EG622841, Igk-V, Olfr443-ps1, GA_x5J8B7W6337-1183223-1183810, Olfr441, Olfr440-ps1, GA_x5J8B7W6337-1221999-1222591, Olfr438, Olfr437, Olfr13, GA_x5J8B7W6337-1270568-1271367, Olfr435, Olfr434, LOC665745, Olfr47, Arhgef5, Nobox, LOC665747
Downstream geneLOC546897, LOC665779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-117D11.T7 (MSMg01no117_d11.b1)MSMg01-117D11.TJ (MSMg01no117_d11.g1)
ACCAG328405AG328406
length728721
length of high quality
(start - end)		673 (46 - 718)633 (69 - 701)
definitionCHROMAT_FILE: MSMg01no117_d11.b1 PHD_FILE: MSMg01no117_d11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:41 2005CHROMAT_FILE: MSMg01no117_d11.g1 PHD_FILE: MSMg01no117_d11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,522,810 - 43,523,478)(43,610,974 - 43,611,607)
sequence
GTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATCAAAAGTCTCATATTTTAATGATCCTACAATTAGCATCTACAT
GCATGATTATACATGTGTGAAATACCTTCTGTCCAGATGTCAAATACCTT
AATGGATAGTCACCAGGTCATAGCATATGCACATTACATATTTTATTACA
TCATACCAGATCATTGCCCATAATGAGTGCACTATCTACACTAAATGAAA
TTTTATTAAATAGTAAAAGACTGAATGAGGCTCACAGCTTCTGTTTGTAT
CAAAGAGAATGCACAGCACATGCTTATACATTAGATCATAGTTACTATGT
AAGATGCCCTGCCATGGAACCATGCATGTGACGAGGCTGACTGTCAAAAG
CTCTAGATTGAAGTCTCAGCTGGAAAGTGGATCCTGGATAGATACAGAGT
CCTTTTCGTTTCCTTTATTGGCAGTCTATAACAACAACCCTTTGGGAATT
TACCTCTTCAAAGCCTGTCCTCATTGCCATAAGTTGATTGTAATAGGCAG
ACTCTTCTAGCCTAAGGGTCTATTCTGAAGCTGTGTACCGCAGTTCTCCT
TATAAGAGGTACTAATATTATTCATGGTTTGCATCAGACATCTTAATAAC
TCTCCTTGCACACTATAGGCATTTACTTATTCATGCATGTGTTTATAGGG
ATACACTGAAAGTTAACCAGACATGGTG

GATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXATAGGAGTTCTTGTGCAGTCAGCTCTTCTACC
TGTAGGCCCTCACAATTGAACTCAGATTCTCAGCTCGGTGGTAAGCACCT
TTACCCACATATGGGGCTTTTGGGGATCCTGCTTGAGGTTTAATGATAAA
GACATGAGACGTCTATATAGTTTAGGGCTGTTGGCTATTTGCTGGGCTAG
TCTCCCAGCTAGCTTCTTAACCCGACTTCTCAGCCATTTTGTTCTAACAG
GGGGTTCTTACTGCCTGATTCCCAGGTCTGTCCTGTTTCCATTTTGTGTT
TTTCTGGCCTGATGTTCTGCTGGTCTTTCTGCCCCTGCTCCAAACTGCCA
GCCCTCATGCAAAAAGCACACTCCTTACTCAACCAATTGGCTTTGGGGGC
TATGTGACCTTGCCCATGGCAGCTGGCCTTTCTCTTTTGAGCAGGTGAGG
AAGTGACAAATAATTACATATCCTGCTACTCTGGTGCTTCCTTAACAGTT
GAAAAACAGGGATACAGTTTTCATAGCTGCTAAATTCAGTATTTGTGGCT
CATCTCAATACCCACAGAGATATTTTGCATGGCTTAGGTACAGTATTGCA
ATCTTTGATATTTTATCAATAAAGTTAGACAATTAACTCTTTAATACTGA
GGAGAGTTGTGAAGATGATGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no117_d11.b1 MSMg01no117_d11.b1 CHROMAT_FILE:
MSMg01no117_d11.b1 PHD_FILE: MSMg01no117_d11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:41 2005
         (673 letters)



>mm_chr6_43522606_43523678
          Length = 1073

 Score = 1263 bits (653), Expect = 0.0
 Identities = 665/669 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatcaaaagtctcatattttaatgatcctacaattagcatctacatgcatgatta 64
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatcaaaagacttatattttaatgatcctacaattagcatctacatgcatgatta 264

                                                                       
Query: 65  tacatgtgtgaaataccttctgtccagatgtcaaataccttaatggatagtcaccaggtc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tacatgtgtgaaataccttctgtccagatgtcaaataccttaatggatagtcaccaggtc 324

                                                                       
Query: 125 atagcatatgcacattacatattttattacatcataccagatcattgcccataatgagtg 184
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 325 atagcatatgcacattacatattttattacatcataccagatcactgcccataatgagtg 384

                                                                       
Query: 185 cactatctacactaaatgaaattttattaaatagtaaaagactgaatgaggctcacagct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cactatctacactaaatgaaattttattaaatagtaaaagactgaatgaggctcacagct 444

                                                                       
Query: 245 tctgtttgtatcaaagagaatgcacagcacatgcttatacattagatcatagttactatg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tctgtttgtatcaaagagaatgcacagcacatgcttatacattagatcatagttactatg 504

                                                                       
Query: 305 taagatgccctgccatggaaccatgcatgtgacgaggctgactgtcaaaagctctagatt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 taagatgccctgccatggaaccatgcatgtgacgaggctgactgtcaaaagctctagatt 564

                                                                       
Query: 365 gaagtctcagctggaaagtggatcctggatagatacagagtccttttcgtttcctttatt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gaagtctcagctggaaagtggatcctggatagatacagagtccttttcgtttcctttatt 624

                                                                       
Query: 425 ggcagtctataacaacaaccctttgggaatttacctcttcaaagcctgtcctcattgcca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ggcagtctataacaacaaccctttgggaatttacctcttcaaagcctgtcctcattgcca 684

                                                                       
Query: 485 taagttgattgtaataggcagactcttctagcctaagggtctattctgaagctgtgtacc 544
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 685 taagttgattgtaataggcagactcttctagtctaagggtctattctgaagctgtgtacc 744

                                                                       
Query: 545 gcagttctccttataagaggtactaatattattcatggtttgcatcagacatcttaataa 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gcagttctccttataagaggtactaatattattcatggtttgcatcagacatcttaataa 804

                                                                       
Query: 605 ctctccttgcacactataggcatttacttattcatgcatgtgtttatagggatacactga 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ctctccttgcacactataggcatttacttattcatgcatgtgtttatagggatacactga 864

                    
Query: 665 aagttaacc 673
           |||||||||
Sbjct: 865 aagttaacc 873


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space:   704769
Effective search space used:   704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no117_d11.g1 MSMg01no117_d11.g1 CHROMAT_FILE:
MSMg01no117_d11.g1 PHD_FILE: MSMg01no117_d11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:42 2005
         (633 letters)



>mm_chr6_43610684_43611717
          Length = 1034

 Score = 1125 bits (582), Expect = 0.0
 Identities = 621/634 (97%), Gaps = 1/634 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataggagttcttgtgcagtcagctcttctacctgtaggccctcacaattgaactcagatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 924 ataggagttcttgtgcagtcagctcttctacctgtaggccctcacaattgaactcagatt 865

                                                                       
Query: 61  ctcagctcggtggtaagcacctttacccacatatggggcttttggggatcctgcttgagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 ctcagctcggtggtaagcacctttacccacatatggggcttttggggatcctgcttgagg 805

                                                                       
Query: 121 tttaatgataaagaca-tgagacgtctatatagtttagggctgttggctatttgctgggc 179
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tttaatgataaagacacggagacgtctatatagtttagggctgttggctatttgctgggc 745

                                                                       
Query: 180 tagtctcccagctagcttcttaacccgacttctcagccattttgttctaacagggggttc 239
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 744 tagtctcccagctagcttcttaacctgacttctcagccattttgttctaacagggggttc 685

                                                                       
Query: 240 ttactgcctgattcccaggtctgtcctgtttccattttgtgtttttctggcctgatgttc 299
           |||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct: 684 ttactgcctggttcccaggtctgtcccgtttccattttgtgtttttctggccagatgttc 625

                                                                       
Query: 300 tgctggtctttctgcccctgctccaaactgccagccctcatgcaaaaagcacactcctta 359
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 624 tgctggtctttctgcccctgctccaaactgccagcccttatgcaaaaagcacactcctta 565

                                                                       
Query: 360 ctcaaccaattggctttgggggctatgtgaccttgcccatggcagctggcctttctcttt 419
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ctcaaccaattggcattgggggctatgtgaccttgcccatggcagctggcctttctcttt 505

                                                                       
Query: 420 tgagcaggtgaggaagtgacaaataattacatatcctgctactctggtgcttccttaaca 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgagcaggtgaggaagtgacaaataattacatatcctgctactctggtgcttccttaaca 445

                                                                       
Query: 480 gttgaaaaacagggatacagttttcatagctgctaaattcagtatttgtggctcatctca 539
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 444 gttgaaaaacagggatacagttttcatagctgctcaattcagtatttgtggctcatctca 385

                                                                       
Query: 540 atacccacagagatattttgcatggcttaggtacagtattgcaatctttgatattttatc 599
           |||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct: 384 atacccacagtgatattttgcatgccttaggtacagtattgcaatctttggtattttatc 325

                                             
Query: 600 aataaagttagacaattaactctttaatactgag 633
           |||||||||||||||||| |||||||||||||||
Sbjct: 324 aataaagttagacaattacctctttaatactgag 291


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1034
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1024
Effective search space:   637952
Effective search space used:   637952
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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