Query= MSMg01no117_f18.b1 MSMg01no117_f18.b1 CHROMAT_FILE:
MSMg01no117_f18.b1 PHD_FILE: MSMg01no117_f18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:53 2005
(539 letters)
>mm_chr6_28323135_28324073
Length = 939
Score = 1025 bits (530), Expect = 0.0
Identities = 538/542 (99%), Gaps = 3/542 (0%)
Strand = Plus / Plus
Query: 1 tcacaggatgttactcagttattcttctttaggaaaaatctgcagagtcgtgtctttctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 tcacaggatgttactcagttattcttctttaggaaaaatctgcagagtcgtgtctttctt 257
Query: 61 gccacgtgaacacatgaaaaaagagcccaacactctgctccagaaacaccagacttattt 120
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 gccatgtgaacacatgaaaaaagagcccaacactctgctccagaaacaccagacttattt 317
Query: 121 ccaacttctttttgctcttaaaaatctgccaccagacagtttatctgcacagtagacatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ccaacttctttttgctcttaaaaatctgccaccagacagtttatctgcacagtagacatc 377
Query: 181 tctttggacaccaacagacagtcttattaaatctgtgacaccatcgacataatctgcaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tctttggacaccaacagacagtcttattaaatctgtgacaccatcgacataatctgcaac 437
Query: 241 tgctaaagacaccagcatttgtctattaaaagcttttattccataagcaaaagtaatgaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tgctaaagacaccagcatttgtctattaaaagcttttattccataagcaaaagtaatgaa 497
Query: 301 aaactgaatcataaaatgcagtataaacataaacctataaaactctcagaaacaaaaatg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 aaactgaatcataaaatgcagtataaacataaacctataaaactctcagaaacaaaaatg 557
Query: 361 tagaagaaaaagtttgagcctaggctacaaaaaaaaaaaa---gtttttagacatgacat 417
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 558 tagaagaaaaagtttgagcctaggctacaaaaaaaaaaaaaaagtttttagacatgacat 617
Query: 418 aaaaaaacataaaggaaaagtaggtcttgccagttaatttgacttaattaatttgatctt 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 aaaaaaacataaaggaaaagtaggtcttgccagttaatttgacttaattaatttgatctt 677
Query: 478 aactatgtttgtttgcttgtgaacatgagttctagtaccagcccagggtgaccaggaact 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 aactatgtttgtttgcttgtgaacatgagttctagtaccagcccagggtgaccaggaact 737
Query: 538 cc 539
||
Sbjct: 738 cc 739
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space: 491441
Effective search space used: 491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no117_f18.g1 MSMg01no117_f18.g1 CHROMAT_FILE:
MSMg01no117_f18.g1 PHD_FILE: MSMg01no117_f18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:53 2005
(584 letters)
>mm_chr6_28434316_28435299
Length = 984
Score = 787 bits (407), Expect = 0.0
Identities = 424/431 (98%), Gaps = 3/431 (0%)
Strand = Plus / Minus
Query: 157 accagacagagcttgatgagcagtagatgtgcaataaatagcagttcaacagaagaagaa 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 984 accagacagagcttgatgagcagtagatgtgcaataaatagcagttcaacagaagaagaa 925
Query: 217 ctatcacaaagcccagcacaggggcacacattcccacattcccagctctcaggaggctaa 276
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 924 ctatcacaaagcccagcacaggggcacacacacccacattcccagctctcaggaggctaa 865
Query: 277 agcaggaatgccacaagtttgaggccagcttggtcactatagtgcttcacaatgagatct 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 agcaggaatgccacaagtttgaggccagcttggtcactatagtgcttcacaatgagatct 805
Query: 337 gtctc---aaaaaaaaaaaaaaaaggaaatatgattatttcttattctatttctttagtt 393
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 gtctcaaaaaaaaaaaaaaaaaaaggaaatatgattatttcttattctatttctttagtt 745
Query: 394 acatggcagcactactgtcagcaaaactggaaccagatggatgctttgttttcactcaaa 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 acatggcagcactactgtcagcaaaactggaaccagatggatgctttgttttcactcaaa 685
Query: 454 gatttcagcaagtgttcaagacacaagaataacttcgtgttcctttactcatcttgattg 513
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 684 gatttcagcaagtgttcaagacacaagaataacttcgtgttcctttactcgtcttgattg 625
Query: 514 aaagctaccatgcacaacttctctccatggaagtcgatcttatcctgcttctgtgcccat 573
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 624 aaagctaccatgcacaacttctctccatggaagtcgatcttattctgcttctgtgcccat 565
Query: 574 ggcccctctaa 584
|||||||||||
Sbjct: 564 ggcccctctaa 554
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space: 559076
Effective search space used: 559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
