Query= MSMg01no117_l04.b1 MSMg01no117_l04.b1 CHROMAT_FILE:
MSMg01no117_l04.b1 PHD_FILE: MSMg01no117_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:20 2005
(619 letters)
>mm_chr6_28706978_28707996
Length = 1019
Score = 1015 bits (525), Expect = 0.0
Identities = 593/617 (96%), Gaps = 6/617 (0%)
Strand = Plus / Plus
Query: 4 gaattccactttcattaccccgtgttcttaccttaaccccttaacccctctacactggga 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 204 gaattccactttcattaccccgtgttcttaccttaaccccttaacccctctacaccggga 263
Query: 64 tagcctgggagggaagaccaaagacctgcagaggtctgttcttataaaaagtcactagtc 123
||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct: 264 tagcctgggaggggagaccaaagacctgcaggggtctgttcttataaaaagtcattagtg 323
Query: 124 gtaag-gtatttgtctctattatggtagcccaagaatgaaattcatagagggcactgtaa 182
||| | ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 324 gta-gtgtattggtctctattatggtaacccaagaatgaaattcatagagggcactgtaa 382
Query: 183 tttcttattacatgtattcatgaatattcatggatgcatatgctgaaactagtgtttacc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tttcttattacatgtattcatgaatattcatggatgcatatgctgaaactagtgtttacc 442
Query: 243 atctttctggagaccagcgcaagcatgagtgacctcagttaaggcatgtctaactcattg 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 atctttctggagaccagcgcaagcatgagtgacctcagttaaggcatgtctaactcattg 502
Query: 303 cttcagtccctaccatctccttatcatgttactatggcttaagtctgtaagatgcttgaa 362
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ctccagtccctgccatctccttatcatgttactatggcttaagtctgtaagatgcttgaa 562
Query: 363 gacagggctattactggtcttgtcaccacttaattccttgtagcagtgcatggatggagt 422
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 563 gacagggctgttactggtcttgtcaccacttaattccttgtagcagtacatggatggagt 622
Query: 423 agtgcttgaacctgagtgagtgagtgagtgagtgagtgaatgcatgaatgaatgaatgag 482
||||||||||||||||||||||| ||| ||| | |||||| ||||||||||||||||
Sbjct: 623 agtgcttgaacctgagtgagtgaatgaatga---a-tgaatgaatgaatgaatgaatgaa 678
Query: 483 ctgattaacttttttgggctagagggagcgggtataacattttaattatttaaaatttca 542
||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 679 ctgattaacctttttgggctagagggggcaggtataacattttaattatttaaaatttca 738
Query: 543 gaaaaacaatccccacagtgttcccacagactggtaaagccatagcagttctgacatcta 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 gaaaaacaatccccacagtgttcccacagactggtaaagccatagcagttctgacatcta 798
Query: 603 agagaccaaactgggtg 619
|||||||||||||||||
Sbjct: 799 agagaccaaactgggtg 815
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space: 614481
Effective search space used: 614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no117_l04.g1 MSMg01no117_l04.g1 CHROMAT_FILE:
MSMg01no117_l04.g1 PHD_FILE: MSMg01no117_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:20 2005
(518 letters)
>mm_chr6_28867280_28868197
Length = 918
Score = 803 bits (415), Expect = 0.0
Identities = 473/509 (92%), Gaps = 30/509 (5%)
Strand = Plus / Minus
Query: 12 gtattagccactacagcaagtgaagtgtgggagcacatgccttcaccatcactgggagag 71
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 918 gtattagccactacagcaagtgaagtgtgggggcacatgccttcaccatcactgggagag 859
Query: 72 agaggtgggtaaatttacatgagtttatgaccagcttgctctacaaggtgagttccaggg 131
|||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 858 agaggtgggtaaatttacatgagtttatgaccagcttgttctacatggtgagttccagga 799
Query: 132 caggcagggctacatattgaaatccttgtcttagagagagagagagagagagagagagag 191
|||||||||||||||||||||||||||||||| ||
Sbjct: 798 caggcagggctacatattgaaatccttgtctt--------------------------ag 765
Query: 192 agagagagagagagagagagagagagagagagagaataaaagaacattactgatatatag 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 agagagagagagagagagagagagagagagagagaataaaagaacattactgatatatag 705
Query: 252 gatatgaagctagcaaatagcaaggtacctaa-cacccaaagtacatgaaccagaggaga 310
|||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||
Sbjct: 704 gatatgaagctagcaaatagcaaggtacctaatc-cccaaagtacacgaaccagaggaga 646
Query: 311 ggc-gtctcgcccactcaatgctcacagcatcttagttcagccaccctccggcatcacgg 369
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 ggcag-ctcgcccactcaatgctcacagcatcttagttcagccaccctccggcatcacgg 587
Query: 370 tctctggagccacatgtcctgtgcctaagaaagtgagtcagttctttacttaaaacatcc 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 tctctggagccacatgtcctgtgcctaagaaagtgagtcagttctttacttaaaacatcc 527
Query: 430 cagatgttctattaagcctccttgcggaaaatgacttttataattaaataaagcaccaac 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 526 cagatgttctattaagcctccttgcggaaaatgacttttataattaaataaagcatcaac 467
Query: 490 gggctcagatctttaaggaaacagatagt 518
|||||||||||||||||||||||||||||
Sbjct: 466 gggctcagatctttaaggaaacagatagt 438
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 77
Number of extensions: 22
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space: 461264
Effective search space used: 461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
