Query= MSMg01no118_a15.b1 MSMg01no118_a15.b1 CHROMAT_FILE:
MSMg01no118_a15.b1 PHD_FILE: MSMg01no118_a15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:46 2005
(626 letters)
>mm_chr6_73938826_73939850
Length = 1025
Score = 886 bits (458), Expect = 0.0
Identities = 581/628 (92%), Gaps = 17/628 (2%)
Strand = Plus / Plus
Query: 9 tcacagtgtagcccatacagaagattttagagaaggaaatgtatcatcatcatagaacct 68
|||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct: 209 tcacagtgtagcacatacagaagattttcgagaaggaaatggatcatcatcatagaacct 268
Query: 69 ttaggttttcatttattttaaatgcagacaattacaaactcaatgtttataagtaaagaa 128
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 269 ttaggttttcatttattttaaatgcaggcaattacaaactcaatgtttataagtaaaaaa 328
Query: 129 agaacattttactattgcaatattttacaatttagttttaaagctgagagcagattaatt 188
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 329 agaacattttactactgcaatattttacaacttagttttaaagctgagagcagattaatt 388
Query: 189 gtagaatttataatgcctctgtcttttagaggcacatgtatcagtgatttgaaccac-aa 247
||||||||| | |||||||||||||||||||||||| ||||||| |||||||||| ||
Sbjct: 389 gtagaattt---acgcctctgtcttttagaggcacatgcatcagtggtttgaaccacaaa 445
Query: 248 cattttgcatgtaatttaaatgctgtttattctacgatctcaaataaagacat-tttttt 306
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 446 cattttgcatgtaatttaaatgctgtttattctacaatctcaaataaagacatattttta 505
Query: 307 ttatttgctagaaaaggtttctttaagtagccactagcaggtgattatatttaaaatcat 366
||| | |||||||||||||||||||||||| | ||||||||||||||||||| ||||||
Sbjct: 506 atatatcctagaaaaggtttctttaagtagctattagcaggtgattatatttacaatcat 565
Query: 367 tatcatgcatgtgtattgctgtgtgtacttgtatgcatgtgtgtgagtgtgtgtgtgtg- 425
||||||||| ||| |||||| ||||||||||| |||| ||||||||||||||||||||
Sbjct: 566 tatcatgcaagtgcattgctatgtgtacttgtgtgca--tgtgtgagtgtgtgtgtgtgt 623
Query: 426 -tgtgtgttatcttttctttctaatgggctgtatgtggaagccatagaacaattgtgtca 484
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 atgtgtgttatcttttgtttctaatgggctgtatgtggaagccatagaacaattgtgtca 683
Query: 485 atcatttttaggtttagtgagatgccgatttatctgctaacgtagctcactggtccaagt 544
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 684 atcatttttaggtttagtgagatgccaatttatctgctaacatagctcactggtccaagt 743
Query: 545 ggttgcatttaaatacattaaaataccaacatgcacttttg-----gtgggg-gtaggtg 598
||||| ||||||||||||||||||||||||||| ||||||| |||||| |||||
Sbjct: 744 ggttgtatttaaatacattaaaataccaacatgtacttttgtgggggtggggagtagg-- 801
Query: 599 gggtgctcctcgaccagtcagtgtttca 626
||||| |||| |||||||||||| ||||
Sbjct: 802 gggtggtcctggaccagtcagtgattca 829
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1025
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1015
Effective search space: 625240
Effective search space used: 625240
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no118_a15.g1 MSMg01no118_a15.g1 CHROMAT_FILE:
MSMg01no118_a15.g1 PHD_FILE: MSMg01no118_a15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:46 2005
(288 letters)
>mm_chr6_74084965_74085652
Length = 688
Score = 313 bits (162), Expect = 6e-90
Identities = 239/304 (78%), Gaps = 60/304 (19%)
Strand = Plus / Minus
Query: 44 caacaccaacaaaaacatagatatgaggatttgtagaaagagatgagtgtaaacagaggt 103
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 caacaacaacaaaaacatagatatgaggatttgtagaaagagatgagtgtaaacagaggt 629
Query: 104 gggaaggattttagagactgtgatttgtgagagatatcagaatatatatatatatatata 163
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 628 gggaaggattttagagactgtgatgtgtgagagatatcagaatatatatatatatatata 569
Query: 164 tatata------------------------------------------------------ 169
||||||
Sbjct: 568 tatatatatatatatatatatatatacatatatatatacatatattatatatatatatat 509
Query: 170 ------tatatatatatatgcttagaattatcaaaagttacaaacttaaatagcttaaaa 223
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct: 508 aaactttatatatatatatggttagaattatcaaaagttacaaacttacatagcttaaaa 449
Query: 224 atgcaaacataatacaaatattttaaatgagctgaaataccttccatggtatcatcaaag 283
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 atgcaaacataatacaaatattttaaatgagctgaaataccttccatggtatcatcaaac 389
Query: 284 agca 287
||||
Sbjct: 388 agca 385
Score = 74.2 bits (38), Expect = 9e-18
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 145 atatatatatatatatatatatatatatatatatatat 182
||||||||||||||||||||||||||||||||||||||
Sbjct: 544 atatatatatatatatatatatatatatatatatatat 581
Score = 74.2 bits (38), Expect = 9e-18
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 145 atatatatatatatatatatatatatatatatatatat 182
||||||||||||||||||||||||||||||||||||||
Sbjct: 546 atatatatatatatatatatatatatatatatatatat 583
Score = 74.2 bits (38), Expect = 9e-18
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 145 atatatatatatatatatatatatatatatatatatat 182
||||||||||||||||||||||||||||||||||||||
Sbjct: 548 atatatatatatatatatatatatatatatatatatat 585
Score = 74.2 bits (38), Expect = 9e-18
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 145 atatatatatatatatatatatatatatatatatatat 182
||||||||||||||||||||||||||||||||||||||
Sbjct: 550 atatatatatatatatatatatatatatatatatatat 587
Score = 72.3 bits (37), Expect = 3e-17
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 146 tatatatatatatatatatatatatatatatatatat 182
|||||||||||||||||||||||||||||||||||||
Sbjct: 543 tatatatatatatatatatatatatatatatatatat 579
Score = 66.5 bits (34), Expect = 2e-15
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 145 atatatatatatatatatatatatatatatatatatat 182
|||||||| |||||||||||||||||||||||||||||
Sbjct: 534 atatatatgtatatatatatatatatatatatatatat 571
Score = 66.5 bits (34), Expect = 2e-15
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 145 atatatatatatatatatatatatatatatatatatat 182
|||||| |||||||||||||||||||||||||||||||
Sbjct: 536 atatatgtatatatatatatatatatatatatatatat 573
Score = 66.5 bits (34), Expect = 2e-15
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 145 atatatatatatatatatatatatatatatatatatat 182
|||| |||||||||||||||||||||||||||||||||
Sbjct: 538 atatgtatatatatatatatatatatatatatatatat 575
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 71
Number of extensions: 29
Number of successful extensions: 29
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 10
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space: 189441
Effective search space used: 189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
