BAC Information

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BAC

Clone NameMSMg01-118I21
Chromosome6 (Build37)
Map Location 18,365,156 - 18,365,669
singlet/doubletsinglet
Overlap geneCttnbp2
Upstream geneMet, Capza2, St7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr
Downstream geneEG545829, Lsm8, Ankrd7, LOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-118I21.T7 (MSMg01no118_i21.b1)MSMg01-118I21.TJ (MSMg01no118_i21.g1)
ACCAG329396AG329397
length833712
length of high quality
(start - end)
32 (119 - 150)519 (76 - 594)
definitionCHROMAT_FILE: MSMg01no118_i21.b1 PHD_FILE: MSMg01no118_i21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:26 2005CHROMAT_FILE: MSMg01no118_i21.g1 PHD_FILE: MSMg01no118_i21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTGCGCCGCTAAACGACTCCTATATTCCACAAACCGCGNAATTCATATTC
CTTGCCAAGTTTTACTACNTTTCTTTGTGNCATCATTGCTTTANAACAAA
GGACACACTTANACAAGGATCTTTGTTCTCAGCTTACATTTTACTCCAAG
GAAATAAACTTTCNCNNACNGAACACAGGAAANCANCTCTTTGNNANACA
AANATTANATGGNAACTTCCAAGTAATGGGNNTTGGAAGCTCCTCTAAAA
ACCTTATCTTTNNNAAACTTTCCTAAANNNAACCCAAAAAAATTTTGGGG
AAAAAAAGGGGAGGGGGCGGGGGGGGGGGGGGGGGGAGGCGAGCGGGAGG
GGAGCTNNNNNNNNNNNNNNCCNNNNAANTATAGAAGAANGGGGGGGGGG
GCGGGTGAGGGGGNNNNTANTNCNCNAAAAAAAAAAAGGCGCTGGGGGGG
GGNNNNNTCCCNNTTTTAANAAAANNNNCTNNNNNNNNAAAANNNNAGTA
TAAAAAAAAAAAAAAGAACTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNANNNNNNNNNAAAAAAAANATTTTNNNNNNNNNNNNNN
NNNNNNNNNNNNNTNTNNNNTNTTTTTTTTTATAAAAAAAAAAAAGAAAA
AGAAGGGGGGGCATCTTNNNTNNTNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNTNNNNNNNNNNNNTNNTNNNNNNNNNNNNNNNNNNN
NNNNNNNNTNNNNNNNNNNNNTNNNNNNNNNNNNNNNNNNNNNNNNNTNN
NNNTNNTTCANTATTGAGTGAGGGGGAGGAGCG
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGCCAGCACTGTGGGATTAGGCCTGTAG
CAGTGCTAGATGCCATTATCCTTGTGGTCCCATCCTCCATACTTCCCTCA
AGAAGAAGGCAGCACTTAACATATGATGTCCCGGTGCCCTACCCACCAGT
AAGGACAATTAGAAGCGATCCATTCTGAAGTCAGGCATCAAGGAGTCATA
ATTTGAGAGACTTGCAAATATGTGTTATAGCTCTCTATCAGTTTTAAAAA
ATAATTTAGTAACATCACCTAAATTATCTTTAGACTAGTATTTGCAGTGT
GCACTGATAACTCACCTGCTAACTTACTTACTGGGGATGTTGTCTCACTG
GCAATGACTATGTTGACTATAGCAAATTACAAAATGTGAAGTTCTACACC
AAGAGTAGAGAAGGCTTTGCAGAGTGTCTCATTGGCTGTGCTGCAAGGTG
CCTGAATGCATGCTGCTTGACAGTCTTTAAAGACCGAGGGCTGGGGAGGA
AATGCAGTTGCTGGCACATGCAAAGCCCCAAGTTCCACCCTACAGATAGA
GAAGAAGGAAGAAAATATTTCACAGGTACAGATATTTCAGTTCCAGCAAC
TCAAATACACAGATACATGTAAGTGTGTGTGTTGTCACTTGTGTACTTTT
TTTGTCTGCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no118_i21.g1 MSMg01no118_i21.g1 CHROMAT_FILE:
MSMg01no118_i21.g1 PHD_FILE: MSMg01no118_i21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:26 2005
         (519 letters)



>mm_chr6_18364956_18365869
          Length = 914

 Score =  888 bits (459), Expect = 0.0
 Identities = 502/519 (96%), Gaps = 5/519 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagcactgtgggattaggcctgtagcagtgctagatgccattatccttgtggtcccatcc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 714 cagcactgtgggattaggcctgtagcagtgctagatgccattatccttgtggccccatcc 655

                                                                       
Query: 61  tccatacttccctcaagaagaaggcagcacttaacatatgatgtcccggtgccctaccca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 tccatacttccctcaagaagaaggcagcacttaacatatgatgtcccggtgccctaccca 595

                                                                       
Query: 121 ccagtaaggacaattagaagcgatccattctgaagtcaggcatcaaggagtcataatttg 180
           |||||||||||     ||||||||||| |||||||||||||||||| |||||||| ||||
Sbjct: 594 ccagtaaggac-----gaagcgatccactctgaagtcaggcatcaaagagtcatactttg 540

                                                                       
Query: 181 agagacttgcaaatatgtgttatagctctctatcagttttaaaaaataatttagtaacat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 agagacttgcaaatatgtgttatagctctctatcagttttaaaaaataatttagtaacat 480

                                                                       
Query: 241 cacctaaattatctttagactagtatttgcagtgtgcactgataactcacctgctaactt 300
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 479 cacctaaattatctttagactagtatttgcggtgtgcactgataactcacctgctaactt 420

                                                                       
Query: 301 acttactggggatgttgtctcactggcaatgactatgttgactatagcaaattacaaaat 360
           | ||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 419 aattattggggatgttttctcactggcaatgactatgttgactatagtaaattacaaaat 360

                                                                       
Query: 361 gtgaagttctacaccaagagtagagaaggctttgcagagtgtctcattggctgtgctgca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 gtgaagttctacaccaagagtagagaaggctttgcagagtgtctcattggctgtgctgca 300

                                                                       
Query: 421 aggtgcctgaatgcatgctgcttgacagtctttaaagaccgagggctggggaggaaatgc 480
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct: 299 aggtgcctgaatgcatgctgcttgacagtcattaaagaccgagggctggggaggaaaggc 240

                                                  
Query: 481 agttgctggcacatgcaaagccccaagttccaccctaca 519
           |||||||||||||||||||||||||||||||| ||||||
Sbjct: 239 agttgctggcacatgcaaagccccaagttccatcctaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 914
Length adjustment: 10
Effective length of query: 509
Effective length of database: 904
Effective search space:   460136
Effective search space used:   460136
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)