Query= MSMg01no118_o23.b1 MSMg01no118_o23.b1 CHROMAT_FILE:
MSMg01no118_o23.b1 PHD_FILE: MSMg01no118_o23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:56 2005
(604 letters)
>mm_chr6_54010828_54011832
Length = 1005
Score = 1139 bits (589), Expect = 0.0
Identities = 601/605 (99%), Gaps = 1/605 (0%)
Strand = Plus / Minus
Query: 1 atggttttaggagacatggtcagtgggtttaaaaatgaatgcatgtc-gggggaggagac 59
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 805 atggttttaggagacatggtcagtgggtttaaaaatgaatgcatgtcggggggaggagac 746
Query: 60 ggggagcggccccttggcgggctgccaagctcatcaattatctcactcctggtgggattt 119
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ggggagcagccccttggcgggctgccaagctcatcaattatctcactcctggtgggattt 686
Query: 120 ccacccacccctgtgtacaccactgatttcccaatcctaattgtcttttcctttctctca 179
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 685 ccacccacccctgtgtacaccaccgatttcccaatcctaattgtcttttcctttctctca 626
Query: 180 gatatacttcagagtctctgtgtctctggaaattaatcactatttgagagattaattgga 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gatatacttcagagtctctgtgtctctggaaattaatcactatttgagagattaattgga 566
Query: 240 attttaaggttattaattgtaatttcctcttcatctggcttttaaaaaaaatttaaggga 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 attttaaggttattaattgtaatttcctcttcatctggcttttaaaaaaaatttaaggga 506
Query: 300 atctacaaggactcctgtatcagccaaaatgtatattagagaggaggaggagaatcctcc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atctacaaggactcctgtatcagccaaaatgtatattagagaggaggaggagaatcctcc 446
Query: 360 taccctctgggttgtttgactggaccttgtcagctactacacgtagagaattattaaact 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 taccctctgggttgtttgactggaccttgtcagctactacacgtagagaattattaaact 386
Query: 420 tagctataaccctcacctgagaatttaagaagaaatggtttacatgataaaattgtatat 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tagctataaccctcacctgagaatttaagaagaaatggtttacatgataaaattgtatat 326
Query: 480 aactatcaaaatgtctaacaataccatttccactctcaactgccttgaattcaaagcaaa 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aactatcaaaatgtctaacaataccatttccactctcaactgccttgaattcaaagcaaa 266
Query: 540 tcatttgaggaagaggaatcaattatttaagagccaaagaaagagagtacctaaaacctt 599
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 265 tcatttgaggaagaggaatcaattatataagagccaaagaaagagagtacctaaaacctt 206
Query: 600 tccca 604
|||||
Sbjct: 205 tccca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1005
Length adjustment: 10
Effective length of query: 594
Effective length of database: 995
Effective search space: 591030
Effective search space used: 591030
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no118_o23.g1 MSMg01no118_o23.g1 CHROMAT_FILE:
MSMg01no118_o23.g1 PHD_FILE: MSMg01no118_o23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:56 2005
(615 letters)
>mm_chr6_53926940_53927958
Length = 1019
Score = 1135 bits (587), Expect = 0.0
Identities = 610/619 (98%), Gaps = 4/619 (0%)
Strand = Plus / Plus
Query: 1 tcatgcttaatgtaaataaacccactcaaatacagtacacagctaaaaatgattttgcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcatgcttaatgtaaataaacccactcaaatacagtacacagctaaaaatgattttgcct 260
Query: 61 gttattgactataataaagaagcaaatgattttagaaattgaaattaagttctcaagagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttattgactataataaagaagcaaatgattttagaaattgaaattaagttctcaagagg 320
Query: 121 cccaagggtaatggccactatggcattgttaagatattgtttttaattatgtgaatttgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cccaagggtaatggccactatggcattgttaagatattgtttttaattatgtgaatttgt 380
Query: 181 tacaccaaggctttaatagcatagctatcttcaaagaatggctgaaatcaacaattctac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tacaccaaggctttaatagcatagctatcttcaaagaatggctgaaatcaacaattctac 440
Query: 241 tgattcaggaaa---aaaaagcatagtgttaaaaaaataataatagaagatactcttcca 297
|||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 tgattcagaaaataaaaaaagcatagtgttaaaaaaataataatagaaaatactcttcca 500
Query: 298 ggaagagggtcccctgagtagacacaagaaaccaccctgctgtctagtttccctgtcttc 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggaagagggtcccctgagtagacacaagaaaccaccctgctgtctagtttccctgtcttc 560
Query: 358 cagcagcaaacctccagcccccttaatggcaccattaatatttaagcaaccactatagtc 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagcagcaaacctccagcccccttaatggcaccattaatatttaagcaaccactatagtc 620
Query: 418 acaacactgcctcagagagcagagcttcactcaacaatgttttaaaaaaaaatggtggaa 477
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 621 acaacactgcctcagagagcagagcttcactcaacaatgtttttaaaaaaaatggtggaa 680
Query: 478 gcaggcttgctttaattgacataaatttagtacacaaaagtaagaattaggtcaatttag 537
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gcaagcttgctttaattgacataaatttagtacacaaaagtaagaattaggtcaatttag 740
Query: 538 cagagttcattaacatttaatcaagtaactactaaagtcacggtgctcca-gtcagtgaa 596
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 741 cagagttcattaacatttaatcaagtaactactaaagtcacggtgctccacgtcaatgaa 800
Query: 597 ttaaggcaacagtatactt 615
|||||||||||||||||||
Sbjct: 801 ttaaggcaacagtatactt 819
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1019
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1009
Effective search space: 610445
Effective search space used: 610445
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
