BAC Information

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BAC

Clone NameMSMg01-119B12
Chromosome6 (Build37)
Map Location 83,664,071 - 83,664,516
singlet/doubletsinglet
Overlap geneVax2
Upstream geneLOC100043412, Hk2, EG622318, Sema4f, D6Mm5e, Dok1, Loxl3, Htra2, Aup1, Dqx1, Tlx2, Pcgf1, Lbx2, A230058J24Rik, Mrpl53, Gcs1, Wbp1, Znhit4, Rtkn, Wdr54, 1700003E16Rik, Dctn1, C330016K18Rik, Mthfd2, Mobk1b, Bola3, D230004J03Rik, Dguok, Actg2, Stambp, LOC664956, Clec4f, Cd207, Vax2os2, Vax2os1
Downstream geneAtp6v1b1, 1700124L16Rik, Ankrd53, Tex261, LOC665004, Nagk, Paip2b, LOC384450, LOC622683, LOC380687, LOC665098, LOC676366, Zfml, Dysf, LOC665114, 4930504D19Rik, Cyp26b1, Exoc6b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-119B12.T7 (MSMg01no119_b12.b1)MSMg01-119B12.TJ (MSMg01no119_b12.g1)
ACCAG329800AG329801
length710705
length of high quality
(start - end)
468 (48 - 515)195 (71 - 265)
definitionCHROMAT_FILE: MSMg01no119_b12.b1 PHD_FILE: MSMg01no119_b12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:08 2005CHROMAT_FILE: MSMg01no119_b12.g1 PHD_FILE: MSMg01no119_b12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCTTCTTGCCTGCTACGGAAAGCACCAGGGTCCCAGGGAAAGG
TGGTGGCGGTGGCAGGCTTGGATTACCAATTGCAGGGATCTGTGAACTAC
ACTTTTCCCTCTTCTGGTACCAATCCCGCTCCACTAAAAGAGTCAGTGTA
GGCTTGGCCCACTGCAGGGTGAGAGCAGAGTTGGAGGCCCCATTCCTTCT
GTTGTCGCCTTGTTGATCGCATTGGTGATCCCCTTCCAAGACAAAACAAA
AGGTTCTTCCCACACTACTTGATCTTGACCAAGGGACGGGCACAAGGGAT
GCCTTAGAGACTGTGGCTTCCTGGAGGAAGCCTCACTGTGGAAGTCATCT
TGGTGGCACAGTATTTATGCCAGCGGCTGGAGACAACGCTTCCATTTTGA
AGGCAGGGTGAGCAGACCAGGGGCTACCAGCTTTGTATTCTCAGAGGAAA
TCTGAGACGTTGGTCAAGCACATGGTCTGACTCTCCTTTACCTCTAAACT
GCTGGCTTTGCACAGCAGTTCATTCTCTGGGGCCACGATGCGTGTGTGTG
CGTGCGTGTGCGCGTGTGTGTGTGTGCGTGTGTGCCGTGTCCTACTTTTT
TCCCTCTTCTCCCACCCCCGCTCTTTTCTTTATCCCCTTTCTCCTCCACC
CTCCCTCCTC
CTCAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTACCAGCGAAATTCCTTTGGGAACTCCATTGAAGAAGAAA
GTAAAATTCCCAGGGTGTGGCTTTATATCAAATAAAATATCTCTTGTACT
TGCTCTGTACCCAAGGGTGTCTCTGAACTTCTGATTCTTCTGTCTCCACC
TCCCAAACAAATATCAAATATCTCTTATTTCTTCTCCTTGAGCTCTACCT
TGCTTGAACAAGTGTGATGGTTTGCATATGCTTGGCCCAGGGAGTACCAC
TATTTGGAGGTGTGTTTTTGTTGGAGTATGCGCGTCACTGTGGGTGTGGG
CTTTAAGATCCTACTCCTAGCTGCTTGCCAGTCAGTATTCTGCTAGCATC
CTTTATATGAAAATGTATAAATCTCATCTCCTCCTGGACCATGCCTGACT
GGATGCTGCCATGCTCCTGCCTTGATGATAATGGACTGAACCTCTTAACC
TGTTATCCATTTCCTATTAACTGTTGCCTATTATAACATTTGCCCTCGCC
ATGTTGTCTGTTCACTGTCCTTACATTTCTTCCTAATCCCTCCCGTCTGC
CCCACGTTATCCCTCACCCCTGTTTCTTTATCATTTTTGTTTCTCCGTTC
CTTTTGCGCAAAATTGTTCCATGGATTAGGCTAAAATCCTTAGATTTTTA
TGTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no119_b12.b1 MSMg01no119_b12.b1 CHROMAT_FILE:
MSMg01no119_b12.b1 PHD_FILE: MSMg01no119_b12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:08 2005
         (468 letters)



>mm_chr6_83663851_83664718
          Length = 868

 Score =  832 bits (430), Expect = 0.0
 Identities = 442/446 (99%)
 Strand = Plus / Minus

                                                                       
Query: 21  tgctacggaaagcaccagggtcccagggaaaggtggtggcggtggcaggcttggattacc 80
           ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 666 tgctacggaaagcaccagggtccgaggcaaaggtggtggcggtggcaggcttggattacc 607

                                                                       
Query: 81  aattgcagggatctgtgaactacacttttccctcttctggtaccaatcccgctccactaa 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 aattgcagggatctgtgaactacacttttccctcttctggtaccaatcccgctccactaa 547

                                                                       
Query: 141 aagagtcagtgtaggcttggcccactgcagggtgagagcagagttggaggccccattcct 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 aagagtcagtgtaggcttggcccactgcagggtgagagcagagttggaggccccattcct 487

                                                                       
Query: 201 tctgttgtcgccttgttgatcgcattggtgatccccttccaagacaaaacaaaaggttct 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 tctgttgtcgccttgttgatcgcattggtgatccccttccaagacaaaacaaaaggttct 427

                                                                       
Query: 261 tcccacactacttgatcttgaccaagggacgggcacaagggatgccttagagactgtggc 320
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tcccacactacaggatcttgaccaagggacgggcacaagggatgccttagagactgtggc 367

                                                                       
Query: 321 ttcctggaggaagcctcactgtggaagtcatcttggtggcacagtatttatgccagcggc 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ttcctggaggaagcctcactgtggaagtcatcttggtggcacagtatttatgccagcggc 307

                                                                       
Query: 381 tggagacaacgcttccattttgaaggcagggtgagcagaccaggggctaccagctttgta 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tggagacaacgcttccattttgaaggcagggtgagcagaccaggggctaccagctttgta 247

                                     
Query: 441 ttctcagaggaaatctgagacgttgg 466
           ||||||||||||||||||||||||||
Sbjct: 246 ttctcagaggaaatctgagacgttgg 221


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space:   392964
Effective search space used:   392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)