BAC Information

Click to search

BAC

Clone NameMSMg01-119B15
Chromosome6 (Build37)
Map Location 41,263,475 - 41,263,604
singlet/doubletsinglet
Overlap gene1810049H19Rik
Upstream geneAgk, E330009J07Rik, BC052883, Ssbp1, Tas2r137, Tas2r108, 1700016G05Rik, LOC669661, Olfr461, Olfr460, Clec5a, Tas2r138, Mgam, EG638904, Moxd2, LOC621968, BC048599, 1700074P13Rik, LOC194360, 1810009J06Rik, LOC100040208, 2210010C04Rik, LOC100039790, Tcrb-V8.2, LOC100040359, LOC100040333, Try4
Downstream geneTry10, Prss3, EG436523, EG386551, LOC100040233, Prss1, Prss2, Tcrb-V13, Ephb6, Trpv6, Trpv5, 1700034O15Rik, Kel, Olfr459, Pip, Sval2, Sval1, Sval3, Sva, Tas2r139, Tas2r144, Gstk1, Tmem139, Casp2, Clcn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-119B15.T7 (MSMg01no119_b15.b1)MSMg01-119B15.TJ (MSMg01no119_b15.g1)
ACCAG329806AG329807
length720715
length of high quality
(start - end)
232 (71 - 302)521 (70 - 590)
definitionCHROMAT_FILE: MSMg01no119_b15.b1 PHD_FILE: MSMg01no119_b15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:09 2005CHROMAT_FILE: MSMg01no119_b15.g1 PHD_FILE: MSMg01no119_b15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:09 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
AAATTTGCGGCGCTAAACGACTCCTATTTTCCCGAGGGGCGCGGAATTCT
CTCGGTTGCCANTACTACGACGATCTTGTCATCATCATCCACAGGGAAAG
CAACTTGAATAAAGACAAGAAGAAAACTGAGAAAACAATTCCTCAAGGTG
TTGGAAGGTGGAGCTCTCAACTTTCAGCTACCTAGGGGTTCTTTTTTCCT
CCTCCTCCTCTTTCTCCTCCTCCTCCTCTTTCACCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCCTTTTTTTTTTTTTTCGAGACAGGGTTTCTCTG
GGAAGCCCTGAATTTCCTGGATTTCACGGTGCACACCCGGCTAGCTTCGA
ACTTTTTATTCTGCCTGCCTCTGCCTCTCAAGTGCTGTTCTTAAAGGCGT
GTGCCATCCATGCTTGGCTACTTAGGGGTTCCTAATGCCCACTTTATCTA
GAACGTTATAACGCTTCACCGTATTCCTAGCACTCTTAAGACAGCTCGTC
CTACATTATTCTTGTTTACACTTCTCTACCGGATATCATGACGATTCTTT
TTAAGTGCCTGTTACTTTGATAGGTTCCCACGTTTTCTTACTTCTCGGCG
TCTCTAGCCCTGTTGAATCATGGCTGATGTACCCGCTTTTCCGACTTTCT
CTCCCTTGACCTTTTTTTCTTCCCCCATTTGACCCCTTTTTCGCCCACCA
CTGTTCTCATGTGCTCTTTT
TGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCTGAGAAGC
ACCTGAAAAAATGTTCAGCATCCTCAATCATCCAAGAAATGCAAATCAAA
ACTACCCGGAGATTTCACCTCACACTAGTTAGAATGGCTAAGATCAAAAA
TTCAGGTGACAGCAGATCCTGATGAGGATAGGGAAAAAGAGGAACACTCC
TCCATTGTTGGTGGGTTTGAAGCTTGTACAACCACTCTGGAAATCAGTCT
GGCGGTTCTTCAAAAAACTGGACATAGTACTACTGGAGGATACCACACTA
CCTCTCCTAGGCATATATCCAGAAGATGTCCCAACTCGTAATAAGGACAC
ATGCTCAACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGA
AAAAACCCAGATTTCCCCCAACAGAGGAATGGATACAGAAAATGTGGTAC
ATTTGCACAATGGAGTACTACTCAGCTATTAAAAAGAATGAGTTTATGAA
ATTCCTAGGCAAATGGATGGACCTGGAGAGCATCATTCTGAGTGAGGTAA
CCCAATCACAAAGGAAATCACAATATGTACTCACTGATAAGTTAGATATT
AGCCCAGAACCTTATGATACCCATGACATAAGGTACTACTTGCTAAATAC
ATGAAATTCTAGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no119_b15.b1 MSMg01no119_b15.b1 CHROMAT_FILE:
MSMg01no119_b15.b1 PHD_FILE: MSMg01no119_b15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:09 2005
         (232 letters)



>mm_chr6_41263275_41263906
          Length = 632

 Score =  213 bits (110), Expect = 8e-60
 Identities = 128/140 (91%), Gaps = 10/140 (7%)
 Strand = Plus / Plus

                                                                       
Query: 1   cgatcttgtcatcatcatccacagggaaagcaacttgaataaagacaagaagaaaactga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cgatcttgtcatcatcatccacagggaaagcaacttgaataaagacaagaagaaaactga 260

                                                                       
Query: 61  gaaaacaattcctcaaggtgttggaaggtggagctctcaactttcagctacctaggggtt 120
           ||||||||||||||||||||||||||| |||||| ||||||          |||||||||
Sbjct: 261 gaaaacaattcctcaaggtgttggaagatggagccctcaac----------ctaggggtt 310

                               
Query: 121 cttttttcctcctcctcctc 140
           ||||||||||||||||||||
Sbjct: 311 cttttttcctcctcctcctc 330


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space:   138929
Effective search space used:   138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)