Query= MSMg01no119_e14.b1 MSMg01no119_e14.b1 CHROMAT_FILE:
MSMg01no119_e14.b1 PHD_FILE: MSMg01no119_e14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:23 2005
(655 letters)
>mm_chr6_16234040_16235096
Length = 1057
Score = 1214 bits (628), Expect = 0.0
Identities = 647/654 (98%), Gaps = 2/654 (0%)
Strand = Plus / Minus
Query: 4 gaattctttattttctctcttatgcttatctacaattaggaatgcatatggttaaaccag 63
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 gaattctttatttactatcttatgcttatctacaattaggaatgcatatggttaaaccag 798
Query: 64 atacattatagaataatgtattctataatggatatacacagtaggaaaagagaatacata 123
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 797 atacattatagaataatgtattctataatggacatacacagtaggaaaagagaatacata 738
Query: 124 gtctaacctatcaataaaaacaaagaaccattttaattacatcctttgataaagcctctc 183
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 737 gtctaacctatcaataaaaacaaagaaccatcttaattacatcctttgataaagcctctc 678
Query: 184 ttttcttttagacctcataaaactaacccagtgtcctcttattgtctgctgtctgccttt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ttttcttttagacctcataaaactaacccagtgtcctcttattgtctgctgtctgccttt 618
Query: 244 gccagtgcatctttctttagacagtatgattttgcttcaaatattagtttgcttcctttt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gccagtgcatctttctttagacagtatgattttgcttcaaatattagtttgcttcctttt 558
Query: 304 aaatttgtgtgaaccttgattttttttttt--aataagggtccaagaatccaggcccatt 361
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 557 aaatttgtgtgaaccttgattttttttttttaaataagggtccaagaatccaggcccatt 498
Query: 362 ctaacccagacctcatccttcagtattacaattatgttgtatttaaattaaaacaaattg 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ctaacccagacctcatccttcagtattacaattatgttgtatttaaattaaaacaaattg 438
Query: 422 tatttttaatttccagtatttcacttcttttgcctagcatattctattggctaagactga 481
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 437 tatttttaatttccagtatttcacttcttttgcctaccatattctattggctaagactga 378
Query: 482 cagtataatgcaatgtcattatgcctaaaaggaatgttcttatctcccccacccctccag 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 cagtataatgcaatgtcattatgcctaaaaggaatgttcttatctcccccacccctccag 318
Query: 542 gtatcatatttgctaccagctttgactaatgactccaacagctaccaacactctataaat 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gtatcatatttgctaccagctttgactaatgactccaacagctaccaacactctataaat 258
Query: 602 tgtttgctgtgtttgttttgtgctgggttgttcccaacctggtaaatgagcatg 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tgtttgctgtgtttgttttgtgctgggttgttcccaacctggtaaatgagcatg 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1057
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1047
Effective search space: 675315
Effective search space used: 675315
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no119_e14.g1 MSMg01no119_e14.g1 CHROMAT_FILE:
MSMg01no119_e14.g1 PHD_FILE: MSMg01no119_e14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:23 2005
(522 letters)
>mm_chr6_16123588_16124509
Length = 922
Score = 975 bits (504), Expect = 0.0
Identities = 517/522 (99%), Gaps = 2/522 (0%)
Strand = Plus / Plus
Query: 1 cagagaaataatgggtggtactttgacggggggcatgaggaataaattggatctccatgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagagaaataatgggtggtactttgacggggggcatgaggaataaattggatctccatgt 260
Query: 61 gggagcaaaagaaggaactactgagctgagcaaaacctactcaattaactgttccagaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggagcaaaagaaggaactactgagctgagcaaaacctactcaattaactgttccagaac 320
Query: 121 aaggaaaccatcagaaagcaagtagtctgatgaagtaaatagagatgtggtacaaaagac 180
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagaaaaccatcagaaagcaagtagtctgatgaagtaaatagagatgtggtacaaaagac 380
Query: 181 tagaaccaatttttttaatctgttttttacttatctttttcttcctttacatttcaaatg 240
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagaaccaattttttaaatctgttttttacttatctttttcttcctttacatttcaaatg 440
Query: 241 ttattcccaaagtcccctataccctccccctgccctcctgcccaacccacccactcccac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttattcccaaagtcccctataccctccccctgccctcctgcccaacccacccactcccac 500
Query: 301 ttcctggccctggctttcctctctaccggggcatatgatcttcacaataccaagggcctc 360
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 501 ttcctggccctggctttcctctctaccgg--catatgatcttcacaataccaagggcctc 558
Query: 361 tcctcccactggtggcgactaggccatcctccgctacatatgcagctagagacatgagct 420
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 559 tcctcccactggtggcgactaggccatcctctgctacatatgcagctagagacatgagct 618
Query: 421 caggggagtactggttagttcatatttttgttcctcctatagggttgcgacccctttagc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 caggggagtactggttagttcatatttttgttcctcctatagggttgcgacccctttagc 678
Query: 481 tccatgagtactttctctagctccttcattgggggccctgtg 522
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tccatgagtactttctctagctccttcattgggggccctgtg 720
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space: 466944
Effective search space used: 466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
